Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq5 123 3e-23 seq390 114 2e-20 seq367 86.0 8e-12 >seq5 Length=4344 Score = 123 bits (136), Expect = 3e-23 Identities = 206/295 (70%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 180724 ACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAA 180783 |||||||| || |||||||||||||||||||| ||||| | ||||||||||| | | Sbjct 71 ACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCAGA 130 Query 180784 TAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACC 180843 ||| | | ||| ||| | || ||||||||||||| ||| | ||||| || ||||| Sbjct 131 TAACA---AATTAAGTTGTCTTTTATATCAAAGATCTGGTGATATGGGATTGGGAGTACC 187 Query 180844 ATATAATATTGCTTTCTATTCATTTTTGGTATGTGTTCTCTCAAAG--TGGTGCAATTTA 180901 | |||||||||| ||||| || | | | | | ||||| | || | ||| Sbjct 188 TTTTAATATTGCTAGTTATTCCCTTCTTGCTTTAATGGTGGCAAAGGTTACTGGA--TTA 245 Query 180902 ACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTAACCATATTGAC 180961 || || ||||||| || |||| || ||||||||| ||||| || || || || Sbjct 246 GAACCAGGTGAATTTATCCATTCTTTAGGAGATGTTCATTTATATGAGAATCACATCGAA 305 Query 180962 CAATTAAAAATTCAATTAAGCAGAAACCCTTACAAGTTTCCAAAAGTAAAATTTA 181016 | | |||||| |||||| |||| ||||| || || ||| | ||||||| Sbjct 306 CCAATAAAAAAGCAATTAGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 >seq390 Length=4512 Score = 114 bits (126), Expect = 2e-20 Identities = 205/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 180724 ACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAA 180783 |||||||| || |||||||||||||||||||| ||||| | ||||||||||| | Sbjct 71 ACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCTGA 130 Query 180784 TAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACC 180843 ||| | | ||| ||| | || ||||||||||| | ||| | ||||| || ||||| Sbjct 131 TAA---TAAATTAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTACC 187 Query 180844 ATATAATATTGCTTTCTATTCA-TTTTTGGTAT-GTGTTCTCTCAAAGTGGTGCAATTTA 180901 | |||||||||| |||||| || ||| | | || | | || | || | ||| Sbjct 188 TTTTAATATTGCTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGGA--TTA 245 Query 180902 ACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTAACCATATTGAC 180961 || || ||||||| || |||| || ||||||||| ||||| || || ||||| Sbjct 246 GAACCAGGTGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAG 305 Query 180962 CAATTAAAAATTCAATTAAGCAGAAACCCTTACAAGTTTCCAAAAGTAAAATTTA 181016 | | |||||| ||| | |||| ||||| || || ||| | ||||||| Sbjct 306 CCAATAAAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 >seq367 Length=8762 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 201064 TATCACATACCTTAAATTATCCTCAAAAACCACTTGTTACAACT-GA-CATTGCAGAATT 201121 ||||| ||| ||| ||||||||||||||| | || || || || || || | || Sbjct 7176 TATCAAATATTTTATTTTATCCTCAAAAACCTTTGGTAACCACGAGATCAATGGAATATC 7235 Query 201122 TAATGGTCTAAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACAC 201181 ||| ||| | |||| || | ||| || ||||| || ||| | |||||||| || Sbjct 7236 TAAAAGTCAGA--GAATTACCTATAGGTCAAAACGCAATAGTTGCAGTAGCATGTTATAC 7293 Query 201182 TGGATACAATCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||||| ||||||||||||||| ||||| | ||| | | || || ||||||||||| Sbjct 7294 TGGATATAATCAAGAAGATAGTATTATTATGAATCAGAGTGCAATAGATAGAGGTTTATT 7353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655276805510000