Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq246 174 1e-37 seq24 167 2e-35 seq168 114 1e-19 seq328 102 6e-16 seq46 102 6e-16 seq301 89.7 4e-12 >seq246 Length=60991 Score = 174 bits (192), Expect = 1e-37 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 400249 GAAAAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATT 400308 ||||| ||| | ||||| ||| ||||||||| || || ||||| | ||||| Sbjct 11707 GAAAAGTTAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAATGCTCTTTAATT 11766 Query 400309 TTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGA 400368 || ||||| |||||||||||||| ||||| | |||||| || | | || | |||| | Sbjct 11767 TTAACAGAAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGTCTTGTAGGAAAA 11826 Query 400369 GATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCT 400428 ||| ||||||| || || || | | ||| |||||||| ||||| | || ||| || Sbjct 11827 GATCATTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGAGAAGCTTCTCAC 11886 Query 400429 aaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAA 400488 ||| | ||| || ||| | ||| | | | || |||||||| | ||| | ||||| Sbjct 11887 AAACAGATTATGGAAAATAAAGAATTGATAAATATTAAAAAAATAATAGGATTAAAACAA 11946 Query 400489 GGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGAT 400548 || |||| || | ||| | |||| |||| ||||||| |||||| ||| | | ||| Sbjct 11947 GGTAAAGAATACAAAGATGTAAAAGATTTAAGATATGGGCATATTATAATTATGACGGAT 12006 Query 400549 CAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTT 400592 |||||| |||||| | ||||||||||||||| | || ||||| Sbjct 12007 CAAGATCATGATGGTTCCCATATCAAAGGATTGTTGATTAATTT 12050 >seq24 Length=118493 Score = 167 bits (184), Expect = 2e-35 Identities = 546/825 (66%), Gaps = 64/825 (8%) Strand=Plus/Plus Query 161002 TTTCTCAAAGAAATTGGCTTTGACAA--AAACGTCGAtttttttCATGTATTCGAATGGA 161059 ||| ||||||||||||| ||| | ||| | || |||| |||| | || |||||| Sbjct 55744 TTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGAT--ATATTTTCCATGAAATCAAATGGA 55801 Query 161060 TTATCAACATTG-AATTTTTTGCGATAACCAAGATCTAC-AAGTAATCTGTCAGCAACAT 161117 || ||| ||| ||| ||| | || | || ||||| || ||| || ||||||| ||| Sbjct 55802 TTTTCAGTGTTGTAATGTTTAGAGA-ATCCTAGATCAACTAAGAGAT-TGTCAGCCACAA 55859 Query 161118 ATTTAATATATTGAGACATTAGTTCAGAATTCATACCAAG-AAGTTTACACGGAAGAGAA 161176 ||| || || | | |||| || | | ||||| |||| || |||| || ||| Sbjct 55860 ATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACG-GGTAGACTT 55918 Query 161177 TCATTAATAAATTCTTCTTCAATTTCAATCGCTTCGTCAATAATTTGGTAAACAACAGAT 161236 ||| || |||||||| ||||||| | | ||||| | || |||| | || Sbjct 55919 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTAC------- 55971 Query 161237 TCTTTCAAACGAT---TATTCAACAA--TGAATACATAATA--CAAGCAAGTTCTACATG 161289 | ||||| | | | | ||| | | ||| | ||| | || |||| ||| ||||| Sbjct 55972 TGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAGAGACATGCAAATTCAACATG 56031 Query 161290 TTTGTTTTCATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCAT 161349 |||||| | | || |||| ||| || | | | ||||| ||||||| || || Sbjct 56032 CACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTA-ATCCAC 56090 Query 161350 TTCTCTAGTTTTTAA-CCAGAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTA 161408 | ||||||| |||||| || || ||||| |||||| ||||||| ||||||| Sbjct 56091 GT------TTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTA 56144 Query 161409 CAATAGAGAATGCTACTAAT-TTGTG----AGCAT-ATGTCTTATCAGATTTAATCCATT 161462 | | ||||| | || | |||| | ||| || | ||||| | | ||||||| Sbjct 56145 CGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTT---ATCCATT 56201 Query 161463 TATTACACCAATCAGCTTTCTTTTTAATACTTGGCATAGTTTTAATAG-----AATTAAT 161517 | || ||| || ||||| |||||||| |||| || || ||| | ||| || Sbjct 56202 TCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAA 56261 Query 161518 GAGTTTATTTCTCAAAGCATCATCTTTAACAAATGTAGTCAACATTAG---TGAATACAT 161574 | || |||||| | ||| ||| | |||| || | |||| ||| ||||| Sbjct 56262 AATCTTTTTTCTCT-----TGTTCTCTAATATATGTT-TCTA--TTAGCAATGAGTACAT 56313 Query 161575 TTCTCCATGAGCATTTTCCATTGCATA--TTGGAAACCATAAGCACATTCAGCTTCTTTT 161632 || ||| |||||| || ||| |||||| |||||| ||||| ||||||| | Sbjct 56314 CTCAGAATGTATATTTTCTAT--CATTATTTGGAATCCATAAACACATCTAGCTTCTGGT 56371 Query 161633 ATTTTCACAACATCAATAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCTGCC 161692 || | || | | || ||||||| || ||| |||||||||| ||||| | ||| Sbjct 56372 ATCTGAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCT 56431 Query 161693 GCAAAAAATGCCAATACGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTATTC 161752 |||||||||||||| || | | ||||||| ||| |||||||| | | || |||| Sbjct 56432 GCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATT---AAGACCATTC 56488 Query 161753 CAATCATTCACATCTTTTGCCAAATCCACTTCTTCAACTGTCCAA 161797 ||||| | | ||| || | ||||| ||||||||| | |||||| Sbjct 56489 CAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAA 56533 >seq168 Length=81637 Score = 114 bits (126), Expect = 1e-19 Identities = 196/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 |||| || | |||||| ||||| | | ||||| ||||| ||| | |||||| ||| | Sbjct 68847 GATTGTCTATATCTTCGCCTCCTAGCTGTGTATTACCTGATGTACTTTTTACTTCGAATA 68906 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 ||||| | | ||||| | ||||||| ||||||||||| | |||| | | Sbjct 68907 CACCATCATTTAACTCCAAAATTGAAACATCAAATGTTCCACCACCTAAATCATACACTG 68966 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 ||| ||| | || || | || |||| |||||| || | || ||||| |||| Sbjct 68967 CGACA---ATTCCATT---TTTATCCTTGTCAACACCATATGCCAGTGCTGCAGCTGTTG 69020 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 ||||||| |||| | ||| | | ||||| | |||| | | || ||| || |||| Sbjct 69021 GTTCATTTATAACACGTGCAACCTCTATTCCAGCCACTCTTGCAGAATTTTTTGTAGCTT 69080 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| ||||| ||| | |||||||||||| || |||||||| || Sbjct 69081 GTCGTTGTGCATCATCAAAATATGCAGGTACTGTAATAACAGC 69123 >seq328 Length=42959 Score = 102 bits (112), Expect = 6e-16 Identities = 389/601 (65%), Gaps = 15/601 (2%) Strand=Plus/Minus Query 281303 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 281362 || |||||||||||||| || || |||||| | |||||||| || | ||||| Sbjct 5976 TTTTTATCTGCTTCTTCGTGTTTCTTGGCTTCTTCTACCATTCTCTTAACATCTTCTTCT 5917 Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 ||| |||||| | |||| || | || | || | | || |||| || ||| Sbjct 5916 GAGTGTCTTCCTCTCATATTCGTTACTGTTAGATGTTGTGTGTTACTTGTAGAAAGATCC 5857 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 ||| || || ||||| ||||| ||| ||| | ||| || | ||||| ||||| ||| Sbjct 5856 TTGGCTGTTACTTTAAGGATACCGTTGTTATCAATTTCACATTTAACTTCTATTTGTGGG 5797 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || ||||| | || |||||||| || || ||||| || || | |||||||||| Sbjct 5796 ACTCCTCTTGGTGCTGGTGGGATTCCATCTAAATTGAAACGACCTAATAAATTATTATCT 5737 Query 281543 -TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGA 281601 | |||| || ||| || || |||| || || || | |||||||||||| Sbjct 5736 CCAAATGAA-GATCTTTCTCCTTCACAAATAGAAATTGTTACGGATGGTTGATTATCTGA 5678 Query 281602 ATAAGTTGTAAATACTCTGGATTTTTTA-CAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || ||||||||| ||| | || | || || |||| || || ||| Sbjct 5677 GTAGGTAGTAAATACT-TGGGTCTTGGATGTTGGGATGGTTGAACACTTAGGGATCATAG 5619 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 || ||| || || || ||||| | | || | ||| || || | |||| || | Sbjct 5618 GTGTTGCAATTCCTCCTGCAGTTTCAATAGAAATTGTAAGTGGGGTTGCGTCAAGAAGTA 5559 Query 281721 CAATATTTTGAAGTTTTTC---ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAG 281777 ||| ||| | | | || |||||| | || | | | ||||||||| ||| | Sbjct 5558 AAATGTTTCCACGATCATCTAAATCAGTATCTCCTTCTAATAAAGCTGCTTGGTAAGCTG 5499 Query 281778 CACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA---GTTTTTTACCATTGA 281834 | || |||||| ||||||||||| | || || | || | || ||| || || Sbjct 5498 CTCCCAATGCAATTGCTTCATCAGGGTGAAGAGAGTGGTTAATCTTTTGTTTTCC---GA 5442 Query 281835 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | || ||| |||| | ||||| ||||| | ||| ||||| || |||| |||| Sbjct 5441 AGAATTCTTCTAAG-AGTTCTAAAACCTTTGGAATTCTAGAAGATCCACCTACTACTACA 5383 Query 281894 A 281894 | Sbjct 5382 A 5382 >seq46 Length=104894 Score = 102 bits (112), Expect = 6e-16 Identities = 379/581 (65%), Gaps = 31/581 (5%) Strand=Plus/Plus Query 130732 AATTGCCATAGATGAAGCTCATTGTATTAGTGCATACGGATTTGATTTTAGGACTGCTTA 130791 ||||| || |||||||| |||||| | ||| || || ||||||||||| ||| ||| Sbjct 88169 AATTGTGATTGATGAAGCACATTGTGTCAGTCAATGGGGTTTTGATTTTAGACCTGATTA 88228 Query 130792 TAGAGAGATT---ACATTTT-TCAAAGAAATTTTACCCAATGTTCCAATATTAGCATTAA 130847 | | ||| | || | | | |||||| |||| | || || |||| |||| Sbjct 88229 TGTCCA-ATTGGCAGATAATCTTAGAGAAAT------CAATATACCTGTAATAGCTTTAA 88281 Query 130848 CTGCGACAGCAACTAATATTGTTGCCAAAGATATTTGTAAGGTTTTGCAATTAAAAACTG 130907 | || || |||| | | ||| | ||||||||| ||| | ||| ||| ||| Sbjct 88282 CAGCCACTGCAAACAGTCGTGTAGAAAAAGATATT-GTAGGATTTCTCAA----AAATCC 88336 Query 130908 ACGAACCCATTAAAGCCTCTTTCGATCGACCTAACTTATATTTAGAGGTACGAATGAAGA 130967 | || | || ||| |||| || || || || | | || ||| || |||| Sbjct 88337 AAAAATCTATAGAAGTAG-TTTCAATAGAAAAAATATAAAATATGAAGTAAGAGAAAAGA 88395 Query 130968 GTAAAAATCCTGCAAATGATATTATTCCAATTATCAATA---AATATCCAAATCAATCC- 131023 |||||| || | ||||| | || |||| ||| | ||||||||| ||| Sbjct 88396 ATAAAAACACTCTTATAAATATTGTATCATTTATAAATGCCTATTATCCAAAT---TCCA 88452 Query 131024 --GTTATTATTTATTGTTTAACCAAGAAAGAGACACAAAAAATAGCTGATATATTGACTG 131081 | ||||||||||||| ||| |||||||| || |||| | |||| |||| | Sbjct 88453 GAGGTATTATTTATTGTACAACAAAGAAAGAATGTGAAGAAATCACAGATAAATTGCAAG 88512 Query 131082 TTCATAAAGTT-GTTTGTGGTATCTATCATGCAGGTTTATCAAACGAACACAAGACAAAA 131140 | ||||| | || ||| | |||||| || |||||| || ||| | || Sbjct 88513 ATTATAAAATCAGTGCAAAATATTT-TCATGCTGGATTATCACCTAAAGACAGAAGGAAT 88571 Query 131141 ACTCATACTAATTTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGT 131200 | || | | || || ||| || | |||||| | ||||| ||||||||||||||| Sbjct 88572 ATACA-AGAAGATTGGTC--TAAAAATCTTAAAATTATTGTAGCTACAATAGCATTTGGT 88628 Query 131201 ATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATT 131260 |||||||| ||| | ||||| || |||| || ||||| ||| || | | | Sbjct 88629 ATGGGTATAGATAGAAAAGATGTACGATTTGTAATACATTATACTCTTCCAAAAAGTGTA 88688 Query 131261 GAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 ||||| ||||||||||||| ||||||||| || | ||||| Sbjct 88689 GAAGGATATTATCAAGAAAGTGGTAGAGCTGGAAGAGATGG 88729 >seq301 Length=54622 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| || ||||| ||||| ||| | ||||| | ||| |||| | |||||||| Sbjct 20309 GAATTATTTTTCCATACAATGGGAGGTAGAGAAGGATTGATTGATACTTCGATTAAAACA 20368 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 |||| |||||||| |||||||||| ||||||||||| | |||||| | | | Sbjct 20369 TCTGAAACTGGTTACATTCAAAGAAGACTTGTCAAGAGTTTAGAAGATTGTTCTATTGCA 20428 Query 435253 TATGATGGTACAGTGAGAAATG 435274 |||||||||| || ||||||| Sbjct 20429 TATGATGGTAGTGTTAGAAATG 20450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740611252648140