Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq157 199 8e-46 seq290 192 1e-43 >seq157 Length=84007 Score = 199 bits (220), Expect = 8e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| | ||||| || || || |||||||||||||| ||||| |||||| Sbjct 52143 CCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTC 52084 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | ||||||| ||||| | |||||| || ||||| || | ||||||||||||||||||| Sbjct 52083 AATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGT 52024 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || |||||||| |||||||| || | || | | ||| ||| Sbjct 52023 ATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACT 51964 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || |||||||| || | ||| || ||||||||||||||| Sbjct 51963 TCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 51916 >seq290 Length=54858 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | ||||| |||| |||||||| ||||||||||||||||| Sbjct 33842 TACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGC 33901 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||||||| || || || |||||||| ||||| || | ||| ||||||||||||| Sbjct 33902 TTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAG 33961 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 |||||||||| ||||| || ||||| || ||||||||||| || |||||| | ||||| Sbjct 33962 GTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTA 34021 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || || || ||||| | || || ||||| |||||||| Sbjct 34022 CTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 34070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822293932210