Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq157 109 1e-18 seq290 102 2e-16 >seq157 Length=84007 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||||||| || || || || ||||| | ||||| ||| | ||| Sbjct 51920 CAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCACCGAC 51979 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | ||| || ||||||||| || ||||| || |||||||| || || || Sbjct 51980 TCCATAGAAAATGTCAAAGCAAAA-ATACAAGACAAGGAAGGAATACCTCCAGATCAACA 52038 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || || || || || || ||||||||||| || || ||| |||||||| | Sbjct 52039 AAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAATAT 52098 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||||||| ||||| ||||| | ||| | ||| Sbjct 52099 CCAGAAAGAATCTACACTTCATTTGGTTCTTAGA 52132 >seq290 Length=54858 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| |||||||||||||| || ||| | ||||| |||| |||||| Sbjct 34067 CAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCTGAT 34008 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || ||||||||||| || || || Sbjct 34007 ACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAACAG 33948 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| ||| | || ||||| || || || |||||| || | Sbjct 33947 AGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAATATA 33888 Query 206353 CAGAAAGAGTCTAC 206366 ||||| || ||||| Sbjct 33887 CAGAAGGAATCTAC 33874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181814894589190