Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq370 370 1e-97 seq24 318 8e-82 >seq370 Length=149473 Score = 370 bits (410), Expect = 1e-97 Identities = 1018/1539 (66%), Gaps = 42/1539 (3%) Strand=Plus/Minus Query 68688 TAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGT 68747 |||| || ||| | || | ||| || | |||||| || |||| ||| ||| | || Sbjct 55746 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 55687 Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 |||||||| || | ||||| | | |||||||| |||| |||||| | || || Sbjct 55686 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 55627 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 ||| || |||||| || || ||||| |||||||| ||||| || ||||||| || Sbjct 55626 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 55567 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 | | | | | |||||| | | ||| | ||| || | | ||| | |||| Sbjct 55566 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 55507 Query 68928 AATTCCGTTACTTGCATATG---ATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 | || | ||| || ||| |||| | ||||||||| |||| || | | |||| || Sbjct 55506 TAGACCCTGACT--CA-ATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGC 55450 Query 68985 TAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 || |||| ||||| || |||||| |||||||| ||||||||||| | |||||| | Sbjct 55449 TAATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTA- 55391 Query 69045 ATCTTGT-GCTTCTAGACTATCGAATGG-ATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 || | | |||||| |||||| ||||| || | || || ||||||| |||| || ||| Sbjct 55390 ATAATCTAGCTTCTTCACTATCAAATGGCATTCT-TAGAATAATAAATACATCGGCTAAT 55332 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATA 69162 || ||||| |||||||| ||||||||||||||| |||| ||| || |||| | Sbjct 55331 CCTTGAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACT 55272 Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCC 69222 ||||| | | | ||||| | ||| | |||| || | ||||| || | || Sbjct 55271 GGATATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCT 55212 Query 69223 TTTAGTTTGAGAAAATCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCT 69282 |||||||| | ||||||||| |||| ||| || | || ||| |||||| Sbjct 55211 TTTAGTTTTATGAAATCAAATTTGTTATCTTTAATGAAAGTTGGAAGACCTATTGATGCT 55152 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 | ||||||||| |||| |||| || || | || | ||| |||| ||| |||||| Sbjct 55151 AAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTA 55092 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 |||||| |||| || | ||||| ||| ||| | | | ||||| | || || ||| Sbjct 55091 GAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAA 55032 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT- 69461 | || || ||| |||| ||||| || || | ||| || || | |||||||| || | Sbjct 55031 ATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAA-GATGTTG 54973 Query 69462 AGCATTTATTACGGTCTTGTAACGCTTCTCTTT--TTCATATTGTGTATATAGCCGTTCG 69519 ||| |||| | |||| | | || ||| |||||||| | ||| || | | Sbjct 54972 AGCTTTTA--CAGTTCTTATTGCCAATCCTTTTGCTTCATATTCTTCATAAAGTTTTACA 54915 Query 69520 AA---TTCA-----TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCA 69571 || |||| | || || ||| || |||| | || | | | | | Sbjct 54914 AACTCTTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGTATCCGCAGAAAAAA 54863 Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTA 69631 |||||| | | || || | |||| |||||| |||| ||| || | |||||| ||| Sbjct 54862 GTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTA 54803 Query 69632 TAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACT 69691 ||| | |||||| ||||| ||| || ||||| ||| ||| | | || | ||| | Sbjct 54802 AAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAAT 54744 Query 69692 CCATA-ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 |||| || || |||||||||||||| |||| ||||| | || |||| || ||| Sbjct 54743 TCATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTT 54684 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| |||| || || | | || | | | | | ||||| || | || || Sbjct 54683 CCTCCTTGATTTACATACTTTGTTGTTGCTTCAAATGTTTTAAGCATAGGTACAACTCCG 54624 Query 69811 TTAGATTTACCATTTGTTCCAGA---AATATAACTTCCTCTTGCGCGAATATTACTAATA 69867 ||| | ||| ||| ||| || | |||| |||| | | |||| |||| Sbjct 54623 AGTGATCTTCCACCTGT---AGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAATA 54567 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 | |||| |||||||| ||||||| || |||||||| ||||| || || || Sbjct 54566 TTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAAT 54507 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGT 69987 ||||| ||||| ||| ||| | || | | ||||||||| | || ||||| || Sbjct 54506 ATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTC 54447 Query 69988 ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGA 70047 | ||||| | |||||| |||||||| | ||||||| | || |||||| ||| | | | Sbjct 54446 TTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAA 54387 Query 70048 TTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATC 70107 || || || | | || ||||| || | ||||||| ||| || |||||||| Sbjct 54386 TTATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATA 54327 Query 70108 AACATATGCTGAGGTCGTTC-TACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || | || ||| |||| ||| |||| | ||| || |||| |||| || ||| ||| Sbjct 54326 AAAACATCCTGTGGTCTTTCATACC-ATAAATTTTTATTTTTTAACAAATACGATCTTTG 54268 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 || |||||| | ||||||||| || | | ||| ||||| Sbjct 54267 CAAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTCT 54229 >seq24 Length=118493 Score = 318 bits (352), Expect = 8e-82 Identities = 609/887 (69%), Gaps = 23/887 (3%) Strand=Plus/Plus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 |||||||| | || | ||| || || ||||| ||||| |||| || |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 39389 ATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA-- 39446 ||||||||||| ||||| | || || | ||| ||||||| || || | | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATC--AACTAAGA 55844 Query 39447 -ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || | || || |||||||||||||| | ||| || ||| |||||||| || | Sbjct 55845 GAT-TGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAA 55903 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT- 39564 | || |||||| || | | ||| |||| ||| || |||| || ||| | | ||| Sbjct 55904 CTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATT 55963 Query 39565 -CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATT-AAG---CAG 39619 |||| |||| |||| | | | ||| || | |||| ||| || Sbjct 55964 TCGAT--TACTGTTTCATATGGTGCTTTTTCTTCTAAGTG----AGCATTTAAGAGACAT 56017 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || || ||| ||| | || ||||||||||| |||||||| || || || || || || Sbjct 56018 GCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCT 56077 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||||| ||||| ||||| ||||| ||||||| |||||||||||||| ||||| || Sbjct 56078 GGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATA 56137 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATC 39796 |||||||| |||||||||| | ||| | ||| || | |||| |||| Sbjct 56138 CCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATC 56197 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || ||| | ||| || ||||| || || | || ||||| || || ||||| Sbjct 56198 CATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAAT 56257 Query 39857 AGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 | | ||| ||||| || ||| ||| |||||| ||||||| || ||||| || Sbjct 56258 AAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCTCA 56317 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 ||||| || ||||| ||| || || ||||| |||| |||||| ||||| | || || Sbjct 56318 GAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGA 56377 Query 39977 ACCTCTG-AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 || || | |||||| |||| | ||||||||| || || ||||| || ||||| Sbjct 56378 ACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAA 56436 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 ||||||||| |||| | ||||||| | ||||||| | | |||||| || | Sbjct 56437 AAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTC 56496 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | ||| || |||| ||||||||||||||| ||||||||||| | ||||| || || Sbjct 56497 TAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATA 56556 Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 | | ||||||| | |||| ||||||||| | ||||||||||| Sbjct 56557 TAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTAT 56603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905451319600