Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq390 96.9 8e-15 >seq390 Length=4512 Score = 96.9 bits (106), Expect = 8e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 6096 AGGTTTTCTCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTTTTTATAAATGTGGCAATC 6155 |||| |||| | ||||| | ||||| | | |||| ||| || | ||| | || ||| Sbjct 335 AGGTGTTCTTTCAAGTTGCTTTTTTATTGGCTCAATGTGATTCTCATATAAATGAACATC 276 Query 6156 ACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAATTTGTGCAATCATATGAGT 6215 ||| | ||||||||||| ||||| || |||| || ||| | ||| || Sbjct 275 ACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTTTTGCCACCATTAAAGC 216 Query 6216 TAGTAGTGAATAACTACTGATATTAAATGGAACTCCCAAAAATAGATCAGCGGATCTTTG 6275 || |||||||||||| |||||||| || |||||||| | |||| |||||||||| Sbjct 215 AAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCGGATCTTTG 156 Query 6276 ATGTAGAATGCAGCTTAGTTTCCCTTGTACTACACAAAATTGTACAAAGCTATGACAAGG 6335 || || || || |||| ||| | | ||| ||||||| | || | |||||| || Sbjct 155 ATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAAATAAACAATGACATGG 96 Query 6336 TGG 6338 ||| Sbjct 95 TGG 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113824834328720