Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq5 109 6e-19 seq390 105 7e-18 >seq5 Length=4344 Score = 109 bits (120), Expect = 6e-19 Identities = 204/293 (70%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 31155 TTCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCT 31214 |||||||||||| |||| | ||| |||| || | ||| || | ||||| |||||| Sbjct 305 TTCGATGTGATTCTCATATAAATGAACATCTCCTAAAGAATGGATAAATTCACCTGGTTC 246 Query 31215 TAGATGGGTCAATTTGGCAATCACATGAACCAA-AAGCGCATAACTCGCTATGTTGAATG 31273 || || | || || | || | || ||| ||| | |||||| || || || || | Sbjct 245 TAATCCAGTAACCTTTGCCACCAT-TAAAGCAAGAAGGGAATAACTAGCAATATTAAAAG 187 Query 31274 GTACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTC---ATCTC 31330 |||| |||||||||| ||| |||||| ||||||||| | ||| | || |||| Sbjct 186 GTACTCCCAATCCCATATCACCAGATCTTTGATATAAAAGACAACTTAATTTGTTATCTG 127 Query 31331 CGGTCACGTAAAATTGAAATAACACATGACAAGGCGGCAAAGCCATTTCACAGGTATCG- 31389 || || |||||||||||||| |||||| || || | ||||||||| | | || | Sbjct 126 CG---ACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCATTTC-CCGTAATTGT 71 Query 31390 ACGGGATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGATCACGCTTAAT 31442 |||||||||| ||| | | || | | |||||||||||| |||||| Sbjct 70 TCGGGATTCCATGCGACAATAACCATTCTTCTACTGGTTGGATCTTTCTTAAT 18 >seq390 Length=4512 Score = 105 bits (116), Expect = 7e-18 Identities = 200/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 31156 TCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTT 31215 || |||||||| |||| | ||| |||| || | ||| || | ||||| |||||| | Sbjct 304 TCAATGTGATTCTCATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTCT 245 Query 31216 AGATGGGTCAATTTGGCAATCACATGAACCAA-AAGCGCATAACTCGCTATGTTGAATGG 31274 | || | ||| || | || | || ||| ||| | |||||| || || || || || Sbjct 244 AATCCAGTAACTTTTGCCACCAT-TAAAGCAAGAAGTGAATAACTAGCAATATTAAAAGG 186 Query 31275 TACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCGGT 31334 ||| |||||||||| ||| | |||| ||||||||| | ||| | || || | | Sbjct 185 TACTCCCAATCCCATATCACCGGATCTTTGATATAAAAGACAACTTAATTTATTATCAGC 126 Query 31335 CACGTAAAATTGAAATAACACATGACAAGGCGGCAAAGCCATTTCACAGGTATCG-ACGG 31393 || |||||||||||||| |||||| || || | ||||||||| | | || | ||| Sbjct 125 GACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCATTTC-CCGTAATTGTTCGG 67 Query 31394 GATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGATCACGCTTAAT 31442 ||||||| ||| | | || | | |||||||||||| |||||| Sbjct 66 GATTCCATGCGACAATAACCATTCTTCTACTGGTTGGATCTTTCTTAAT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513015099039200