Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq24 109 6e-19 >seq24 Length=118493 Score = 109 bits (120), Expect = 6e-19 Identities = 323/486 (66%), Gaps = 18/486 (4%) Strand=Plus/Minus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 94499 ||||||||||||||| |||||| | || || ||||| ||||||||||| ||| ||||| Sbjct 56533 TTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGGTCTTAATGA 56474 Query 94500 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGT 94559 |||||| | || |||| || | ||||||| ||||| | ||| ||||| ||||| Sbjct 56473 TGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGATGGGATTGT 56414 Query 94560 TTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATCCT 94618 | ||| ||| | | || ||||| | || || || || | | ||||| |||| Sbjct 56413 TAATGAAAATCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATAC-CAGAAGCTAGATGTG 56355 Query 94619 TCTATGCGTATCAGTGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATA 94677 | |||| | || | || || |||| | ||| |||| ||| || ||| Sbjct 56354 TTTATG-GATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATTGCTAATA 56296 Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA---GCTCTTTGAAGCCATCCAAACA 94734 || | ||||||| || | ||||| || | | ||| | || || ||| Sbjct 56295 GAAACATATATTA--GA-GAACAAGAGAAAAAAGATTTTTTATTTAACGCAATTTCTACA 56239 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAGTCG 94791 | || ||| |||| ||||| || ||| ||||||| ||| | |||| ||| || Sbjct 56238 ATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAAAATCA 56179 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 || |||||| || | | ||||||||||| || || ||||| ||||||||||| Sbjct 56178 TGT---TTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCTCTGGA 56122 Query 94852 TCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 | ||| ||| | || | ||||| || || || || | ||||||||||| ||||| Sbjct 56121 T-CTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTACTTTCTC 56063 Query 94911 CAACGA 94916 ||| || Sbjct 56062 CAATGA 56057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257956603600