Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq390 122 7e-23 seq5 118 8e-22 >seq390 Length=4512 Score = 122 bits (134), Expect = 7e-23 Identities = 254/376 (68%), Gaps = 3/376 (1%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCAAAGTCAT 111622 ||| ||| | |||||| ||||||| |||||| | |||||| || | | ||| |||| Sbjct 459 AAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAGTATAAAATCAT 400 Query 111623 CAGCAACAAAATCGTCAATGCAAGCA-ACTCTTCGTTT--AATTTTTAGTTTTGGAAAGG 111679 || ||||||||| || | | | | ||| ||| || ||| | ||| || || | Sbjct 399 CAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAATTTTAGGGAATG 340 Query 111680 GGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCG 111739 | ||| ||| ||| || || || |||| |||||||| ||| | ||| Sbjct 339 GATAAGGTGTTCTTTCAAGTTGCTTTTTTATTGGCTCAATGTGATTCTCATATAAATGAA 280 Query 111740 CATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGT 111799 |||| |||| | ||||||| ||||| | || || || ||||| | | ||| | ||| Sbjct 279 CATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTTTTGCCACCATTA 220 Query 111800 ATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATC 111859 | | || || ||||||||||| ||||| || || || | |||||||| || |||| Sbjct 219 AAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCGGATC 160 Query 111860 TTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGAC 111919 ||||||||| |||| || |||||| | | |||||||||||| | | ||||| Sbjct 159 TTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAAATAAACAATGAC 100 Query 111920 AAGGAGGCAATGCCAT 111935 | || || | ||||| Sbjct 99 ATGGTGGAAGAGCCAT 84 >seq5 Length=4344 Score = 118 bits (130), Expect = 8e-22 Identities = 257/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCAAAGTCAT 111622 ||| ||| | |||||| ||||||| |||||| | |||||| || ||| ||| |||| Sbjct 459 AAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAATATAAAATCAT 400 Query 111623 CAGCAACAAAATCGTCAATGCAAGCA-ACTCTTCGTTT--AATTTTTAGTTTTGGAAAGG 111679 || ||||||||| || | | | | ||| ||| || ||| | ||| || || | Sbjct 399 CAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAATTTTAGGGAATG 340 Query 111680 GGGTAGG----CTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACA 111735 | ||| ||||| ||| || || || || | |||||||| ||| | | Sbjct 339 GATAAGGTGTTCTTTC---TAAT-TGCTTTTTTATTGGTTCGATGTGATTCTCATATAAA 284 Query 111736 TGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATC 111795 || ||||||||| | ||||||| ||||| | || || || ||||| | | ||| | | Sbjct 283 TGAACATCTCCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACCTTTGCCACC 224 Query 111796 ATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCC 111855 || | | || || ||||||||||| ||||| || || || | |||||||| || Sbjct 223 ATTAAAGCAAGAAGGGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCA 164 Query 111856 GATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACA 111915 ||||||||||||| |||| || ||| || | || |||||||||||| | | | Sbjct 163 GATCTTTGATATAAAAGACAACTTAATTTGTTATCTGCGACATAAAATTGAAATAAACAA 104 Query 111916 TGACAAGGAGGCAATGCCAT 111935 ||||| || || | ||||| Sbjct 103 TGACATGGTGGAAGAGCCAT 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391943737033570