Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq24 84.2 2e-11 >seq24 Length=118493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCAT---TTG 59976 || ||||| | |||||||| ||| | ||| | ||||| | | | ||||| ||| Sbjct 56231 CAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAAAATCATGTTTTG 56172 Query 59977 C-ACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 | |||| | | || || ||||| ||||| ||||| || ||||||||||| || || Sbjct 56171 CTACAA-GAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCTCTGGATCTTTTGCA 56113 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | || |||||||| ||||| ||||| | ||||| || || | ||||||||| || Sbjct 56112 TCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTACTTTCTCCAATGA 56057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522125941600