Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq157 150 2e-31 seq290 98.7 9e-16 >seq157 Length=84007 Score = 150 bits (166), Expect = 2e-31 Identities = 178/240 (74%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 26976 AATTTATACGCCA-TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGA 27034 ||||| ||| ||| ||||||||||||| ||||| || || |||||| | || || || || Sbjct 51904 AATTTTTACCCCAATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGA 51963 Query 27035 AGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| ||| | ||||||| || || | |||||| |||||| |||||||| ||||| || Sbjct 51964 AGTCGAATCCACCGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAAT 52023 Query 27095 ACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGT 27154 ||| || |||||||| | || |||| || || |||||||||||||| || || | Sbjct 52024 ACCTCCAGATCAACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATT 52083 Query 27155 TTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || || || || | ||||||||| | | ||| |||| || Sbjct 52084 GAGTGATTACAATATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGG 52143 >seq290 Length=54858 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || || || | |||||||||||||| ||| || Sbjct 34070 ATGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCT 34011 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || || |||||||| ||||| || |||||| Sbjct 34010 GATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAA 33951 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || |||| || || ||||| | || || || || | |||||| || Sbjct 33950 CAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAAT 33891 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || || ||||| || || || ||||| || || Sbjct 33890 ATACAGAAGGAATCTACGTTGCATTTAGTATT 33859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916279772800