Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 4e-13 >seq5 Length=4344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 237/361 (66%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 125942 TTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAATCTTCATAATTAATATCAAA 126001 ||| |||| || || |||||||||| ||| ||||| ||| | | || ||| | Sbjct 443 TTTTATAGTTGGATGACTTTCATAATTTTCTAATATAAAATCATCAAATTCAAAATCGTA 384 Query 126002 AAT--TG----ATTTATCTGTATTAATTTTTAATTGAGGTGGTAGATAACTATCTCTTGA 126055 || || |||| || | |||| ||| | || ||| | ||||| |||| Sbjct 383 GATACTGTCGTATTTTTCCTTTTTAAATTTAATTTTAGGGAATGGATAAGGTGTTCTTTC 324 Query 126056 TAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATG 126115 |||||| | | ||||| || || ||||| ||| | ||| ||||||| || | ||| Sbjct 323 TAATTGCTTTTTTATTGGTTCGATGTGATTCTCATATAAATGAACATCTCCTAAAGAATG 264 Query 126116 AATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATA 126175 || |||||||| || | |||| | ||||| || | | || | | ||| Sbjct 263 GATAAATTCACCTGGTTCTAATCCAGTAACCTTTGCCACCATTAAAGCAAGAAGGGAATA 204 Query 126176 ACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACA 126235 ||| |||||||| ||||| || || || |||||| || |||||||||||| |||| Sbjct 203 ACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCAGATCTTTGATATAAAAGACA 144 Query 126236 ATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCAT 126295 | ||||||| ||| || ||||||||||| | || || ||||| | ||||| Sbjct 143 ACTTAATTTGTTATCTGCGACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCAT 84 Query 126296 T 126296 | Sbjct 83 T 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408596457880730