Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq24 379 2e-100 >seq24 Length=118493 Score = 379 bits (420), Expect = 2e-100 Identities = 580/816 (71%), Gaps = 8/816 (1%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 |||||||| | |||| ||||| |||||||| ||||| |||| ||| || ||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTAC-AAGCAA 4378 || |||||||| ||||| | |||||||||||| | |||| | || ||| | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 | | ||||| ||||||||||| || | | ||| || ||||| ||||||||||| || Sbjct 55847 TTG-TCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACT 55905 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 || ||||| | | | ||| |||||||| || | ||| |||||| | | ||| || Sbjct 55906 TACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTC 55965 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 ||| | | || | | || ||| | | |||||| || || | ||| ||||| || Sbjct 55966 GATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAGAGACATGCAAATTC 56025 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 | ||||| ||||| ||||| || || | ||| || || || || | || |||||||| Sbjct 56026 AACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAA 56085 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 || | ||||||||||| ||||| | ||||| || ||||| ||||| || |||||||| Sbjct 56086 TCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTAC 56145 Query 4679 GGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 | ||||| || | || || | | | ||| | | ||| || | |||||||| | Sbjct 56146 GCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTT-TTTATCCGTTATCCATTTCA 56204 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTA- 4796 | ||||| ||||| || |||| || ||||| | || ||||||||||| | Sbjct 56205 TAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAAT 56264 Query 4797 CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGT 4856 |||||||| | | ||| |||||| || |||||||| | ||||| ||||||||| Sbjct 56265 CTTTTTTC-TCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGAATGT 56323 Query 4857 ATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT-C 4915 ||||||||||| || || ||||| |||| ||||||||||||| || ||||||| | Sbjct 56324 ATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCC 56383 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | | |||||| |||||| | ||||| || || || || || ||||||||||| || Sbjct 56384 GCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGC 56442 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 ||| |||| | |||||| | ||| ||| ||||| ||||| | | ||||| Sbjct 56443 CAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATC 56502 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 |||| |||||| ||||||||| ||||||||||||| Sbjct 56503 ATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGA 56538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047570179870