Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq370 365 6e-96 seq24 304 2e-77 >seq370 Length=149473 Score = 365 bits (404), Expect = 6e-96 Identities = 1017/1539 (66%), Gaps = 42/1539 (3%) Strand=Plus/Minus Query 75691 TAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGT 75750 |||| || ||| | || || ||| |||| |||||| ||||||| || ||||| || Sbjct 55746 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 55687 Query 75751 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGA 75810 |||||||| || | ||||| | | ||||||| ||||||||||| | || || Sbjct 55686 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 55627 Query 75811 AGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 75870 || || |||||| || || ||||| |||||| | ||||| || ||||||| || Sbjct 55626 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 55567 Query 75871 TTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAG 75930 | | | | | |||||| | | ||||| ||| | | | ||| | |||| Sbjct 55566 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 55507 Query 75931 AATTCCGTTGCTAGCATATG---ATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGC 75987 | || | || || ||| |||| | ||||||||||||||| || | | ||| || Sbjct 55506 TAGACCCTGACT--CA-ATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGC 55450 Query 75988 TAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG 76047 || ||| ||| | || || ||| |||||||| ||||||||||| | |||||| | Sbjct 55449 TAATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTAA 55390 Query 76048 --ATCTTGCGCTTCAAGACTATCAAAAGG-ATAATGTAAAAGAATAAATGCATCTGCTAG 76104 |||| || ||| ||||||||| || || | || || ||||||| |||| |||| Sbjct 55389 TAATCTAGC--TTCTTCACTATCAAATGGCATTCT-TAGAATAATAAATACATCGGCTAA 55333 Query 76105 TCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAAT 76164 ||| ||||| |||||||| ||||||||||||||| |||| ||| || |||| | Sbjct 55332 TCCTTGAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTAC 55273 Query 76165 AGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTC 76224 || || | | | ||||| | ||| | |||| | |||| ||||| || | || Sbjct 55272 TGGATATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTC 55213 Query 76225 CTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGC 76284 |||||||| | ||||||||||| |||| | | || | |||| |||| ||||| Sbjct 55212 TTTTAGTTTTATGAAATCAAATTTGTTATCTTTAATGAAAGTTGGAAGACCTATTGATGC 55153 Query 76285 TAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATT 76344 || ||||||||| |||| |||| || || | || | ||| || | || ||||| Sbjct 55152 TAAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATT 55093 Query 76345 ACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATA 76404 | ||| || |||| ||||| ||||| ||||| | | | ||||| | || ||||| Sbjct 55092 AGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATA 55033 Query 76405 AAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT 76464 || | || ||| | || ||||| || |||| ||| || || | |||||| | | Sbjct 55032 AATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTG 54973 Query 76465 AGCTTTTA------TTATAG--ATTTGTATCGCTTC-TCTCTTTCATATTGTGTATATAA 76515 |||||||| |||| | | | | | ||||| | | |||||| || | || || Sbjct 54972 AGCTTTTACAGTTCTTATTGCCAATCCTTTTGCTTCATATTCTTCATAAAGT-TTTACAA 54914 Query 76516 CCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAA 76575 | | | | | || || ||| ||| |||| | || || | | | | Sbjct 54913 ACTCTTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGTATCCGCAGAAAAAAG 54862 Query 76576 TGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 76635 |||||| || || ||| | || | |||||| || | ||| |||| ||| || | | Sbjct 54861 TGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAA 54802 Query 76636 AAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTC 76695 ||||| ||||| ||||| ||| || ||||| ||||||| | | |||| || | Sbjct 54801 AAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAATT 54743 Query 76696 CATA-ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTAC 76754 |||| || || |||||||||||||| |||| ||||| |||| |||| || || | Sbjct 54742 CATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTC 54683 Query 76755 CTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA-CATTGGAATAATGCCG 76813 |||| |||| || ||| | | || | || || | | || ||| || | || ||| Sbjct 54682 CTCCTTGATTTACATACTTTGTTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCG 54624 Query 76814 TTAGATGTACCATTTGTTCCAGA---AATATAACTTCCACATGCACGAATATTACTAATA 76870 ||| | ||| ||| ||| || | ||| ||| | | |||| |||| Sbjct 54623 AGTGATCTTCCACCTGT---AGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAATA 54567 Query 76871 GATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAG 76930 | |||| |||||||| ||||||| || ||||||||| ||||| || || | Sbjct 54566 TTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAAT 54507 Query 76931 ATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA 76990 || || |||||| ||| || | || | | ||||||||| | || ||||| || Sbjct 54506 ATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTC 54447 Query 76991 ACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGA 77050 ||||| | ||||||||||||||| | ||| ||| | || |||||| ||| | || | Sbjct 54446 TTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAA 54387 Query 77051 TTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATC 77110 || || || | | | | ||||| || | ||||||| ||| || |||||||| Sbjct 54386 TTATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATA 54327 Query 77111 AACATATGCTGAGGTCGTTC-TACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 77169 || | || ||| |||| ||| ||| | ||| || |||| ||||| || ||| ||| Sbjct 54326 AAAACATCCTGTGGTCTTTCATACCAT-AAATTTTTATTTTTTAACAAATACGATCTTTG 54268 Query 77170 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 77208 ||||||||| | |||||||| || | | ||| ||||| Sbjct 54267 CAAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTCT 54229 >seq24 Length=118493 Score = 304 bits (336), Expect = 2e-77 Identities = 606/888 (68%), Gaps = 25/888 (3%) Strand=Plus/Plus Query 46342 TGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 46401 |||||||| | || | ||| || || ||||| ||||| |||| || |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 46402 ATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGT 46461 || |||||||| ||||| | || ||| ||| ||||||| || | || Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 46462 CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTG 46521 | || || || |||||||| || | ||| || ||| |||||||| || | | Sbjct 55847 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55906 Query 46522 ACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT--CG 46579 || |||||| || | || ||| ||||||||||| | || || || | ||| || Sbjct 55907 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCG 55966 Query 46580 ATGTTACTGTTTCCTCACTTGGTGGATG--CATCAAATGTTTAAACATTAAA----CATG 46633 || ||||||||| | ||||| | | || || | | |||| || |||| Sbjct 55967 AT--TACTGTTTCATA---TGGTGCTTTTTCTTCTAAG---TGAGCATTTAAGAGACATG 56018 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||| ||| ||| | |||||||||||||| |||||||| || || || || || || | Sbjct 56019 CAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTG 56078 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||||| |||||| ||||| ||||| ||||| | || ||||||||||| ||||| || | Sbjct 56079 GCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATAC 56138 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCC 46810 ||||||| ||| ||||| | | ||| | ||| | | |||| |||| Sbjct 56139 CTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCC 56198 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | || ||| || || || || || | || ||||| || || ||||| | Sbjct 56199 ATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATA 56258 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTC 46928 ||| | ||||| || ||| ||| |||||| ||||||| || || || ||| || Sbjct 56259 AAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTA--CATCTC 56316 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 ||||| || ||||| || || || ||||| |||| |||||| ||||| | ||||| Sbjct 56317 AGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTG 56376 Query 46989 TACCTCTG-TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 || || | | |||||| ||| | | ||| ||||| || || ||||| || |||| Sbjct 56377 AACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAA 56435 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCAT 47107 |||||||||| |||| | ||||||| | ||||||| | | || |||||| || | Sbjct 56436 AAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGT 56495 Query 47108 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTAT 47167 | ||| || |||| ||||||||||||||| ||||| || || | ||| | |||| Sbjct 56496 CTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTAT 56555 Query 47168 ACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 | | || ||||||| | |||| || ||||| | ||||||||||| Sbjct 56556 ATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTAT 56603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930924444800