Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq145 282 4e-71 >seq145 Length=92206 Score = 282 bits (312), Expect = 4e-71 Identities = 607/897 (68%), Gaps = 28/897 (3%) Strand=Plus/Plus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 ||| ||||| || || | |||||| ||||| || |||||||| | |||||||||||| Sbjct 84944 TCTCTGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATT 85003 Query 15970 TTCCATAAAATCAAAGGGATT---AGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGT 16026 |||||| |||||||| ||||| ||| | || ||| | |||||| | || || || Sbjct 85004 TTCCATGAAATCAAATGGATTTTCAGT-GTTG-TAATGT-TTAGAGAATCCTAGATC--- 85057 Query 16027 AACTAA---TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCC 16083 |||||| | || || ||||||||||| || | |||||| | | || || ||||| Sbjct 85058 AACTAAGAGATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCC 85117 Query 16084 TATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTT 16143 || | | ||| || ||| || | | ||||| |||||| || | || |||||||| Sbjct 85118 AATTAAACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTT 85177 Query 16144 AATGATATCGGTGGCTCGTGTTTCAGACGGTG---TATGGTTTAGGTG----TTTAAACA 16196 || || ||| | | ||||||| | |||| | | | || ||| ||||| Sbjct 85178 AACTATTTCGAT---TACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAA--- 85231 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 ||||| || || || ||| | |||||| ||||| ||||| | ||| ||||| |||| Sbjct 85232 -GAGACATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAG 85290 Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAA 16316 | | ||||||||| ||| ||||| || | ||||||||| | ||||| || || || | Sbjct 85291 TAAGACCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGA 85350 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 |||| ||||| || || | ||||| || |||| || | || | | | ||||| Sbjct 85351 AGAAAATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTAT 85410 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 ||||||||| ||| || ||||| | ||| || || || || | Sbjct 85411 CCGTTATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTG 85470 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | ||||| || ||||||| || || | ||||| || || || || || || Sbjct 85471 CGTTAAATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGT 85530 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 |||| || || ||||| || ||||| ||| || |||||||| | |||| ||| || | Sbjct 85531 ACATCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTG 85590 Query 16557 CTATTTGTACTTCCAC-GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 ||| || |||||| | | ||||| ||| || || ||||| || || || || | Sbjct 85591 GTATCTGAACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGAT 85649 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || |||||||| ||||| | | | || |||| | |||| ||| ||||| || | Sbjct 85650 GCTGCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTC 85709 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 ||||| | |||||| || |||| ||| |||||||| | |||||||| | | |||| Sbjct 85710 CAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCC 85769 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTATCT 16792 | ||||| | | ||| ||| || ||||| ||| ||||| | || |||||||| Sbjct 85770 TGCTTATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCT 85826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411702289040