Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq267 91.5 1e-13 >seq267 Length=65599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| ||||| ||||||| | |||||||| || || || ||| ||| || | Sbjct 33128 AATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCAC 33187 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | || | || |||||| || || ||||| | || |||||| Sbjct 33188 CGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCA 33247 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | || ||||| || |||||| |||||||| | ||| || |||||||| Sbjct 33248 ACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAA 33307 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||| |||||||| ||||| |||| | |||| | ||||| Sbjct 33308 TATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGG 33355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428333797014410