Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq145 284 1e-71 >seq145 Length=92206 Score = 284 bits (314), Expect = 1e-71 Identities = 556/806 (69%), Gaps = 18/806 (2%) Strand=Plus/Plus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 ||||||||||||||||| || ||||| |||| | |||||||||||||| ||||||||| Sbjct 84960 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 85019 Query 13656 GGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAA 13713 |||||| | || ||| |||| | ||||| || | || | | ||||| | Sbjct 85020 GGATTTTCAGTGTTGTAATG--TTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCCA 85077 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 ||| || || || | | |||| | | ||| ||||| || |||| |||| || | Sbjct 85078 CAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGAC 85137 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | | | | |||||||| ||| || | || || ||||| | || || | || | | Sbjct 85138 TTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTAT--TTCGATTACTGT 85195 Query 13834 CATTAGAAGGAGGATATT-TTAGATGTTTAAAAATTAA---ACACGCAAAATCACAATGA 13889 | | | || | | || || | || | | |||| ||| ||||| ||| ||| Sbjct 85196 T-TCATATGGTGCTTTTTCTTCTAAGTG-AGCATTTAAGAGACATGCAAATTCAACATGC 85253 Query 13890 AGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGt 13949 | || ||||||||||| || | ||| || || || || | |||||||| ||||| ||| Sbjct 85254 ACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCACGT 85313 Query 13950 ttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCA-GC 14008 ||||| | ||| ||||| | ||||| || || || ||||| || || || || ||| || Sbjct 85314 TTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTAC-GCACGC 85372 Query 14009 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14068 ||| || |||| || | |||| ||| |||||| | || ||||||||| ||| ||| Sbjct 85373 AAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATAGTCCA 85432 Query 14069 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC-CTTCT 14127 || | ||| |||||||| ||||| ||| || ||||||||| | || || | Sbjct 85433 GTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTTTT 85492 Query 14128 CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT 14187 || | || | | ||| ||||| || || || || ||||| ||||| ||||| |||| Sbjct 85493 CTCTTGTTC-TCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGAATGTATATTTT 85551 Query 14188 CCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG-AGTAA 14246 | || ||| || || ||||||| ||||||||||| | || ||||||| | || Sbjct 85552 CTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCGCTGCAA 85611 Query 14247 AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATG 14306 ||| |||| | |||||||||||| || ||||| ||||||||||||||||| | Sbjct 85612 AAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCAACACA 85670 Query 14307 TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAA 14366 | | ||||| | | || |||| || || ||||||||| |||||| ||||| Sbjct 85671 TAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCATTAGAT 85730 Query 14367 AGATCTACTTCATCAACTGTCCAAAA 14392 | ||||||||| ||| | |||||||| Sbjct 85731 AAATCTACTTCTTCAGCAGTCCAAAA 85756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725469434800