Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq145 289 4e-73 seq56 239 6e-58 >seq145 Length=92206 Score = 289 bits (320), Expect = 4e-73 Identities = 611/899 (68%), Gaps = 23/899 (3%) Strand=Plus/Plus Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 |||||||| | || | |||||| || ||||| || ||||||| || |||||||||||| Sbjct 84948 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 85007 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896 ||||||||||| ||||| | || ||| ||| ||||| | ||| | | Sbjct 85008 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 85067 Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 41956 | || || | |||||||| || | ||| || ||| |||||||| || | | Sbjct 85068 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 85127 Query 41957 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 42016 || || ||| ||| || ||||||||||||||| | || || ||| ||| | || | Sbjct 85128 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCT-TTA-ACTATTT 85185 Query 42017 C--TTACTGTTTCTTCACTCGGTGGATACAATAAATG----TTTAAACATCAAACATGCG 42070 | |||||||||| | | | | ||| || ||||| | |||||| Sbjct 85186 CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCA 85241 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || || |||| || ||||||||||| |||||||| ||||| || || || || ||| Sbjct 85242 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 85301 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 |||| ||||| ||||||||||| ||||| || ||||| |||||||| ||||| || ||| Sbjct 85302 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 85361 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCAC 42247 ||||| |||||| ||||| | ||| || ||| | | | || |||||| Sbjct 85362 TCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCAT 85421 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || || ||| || || || ||||| | || || || || || ||||| | | Sbjct 85422 TTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAA 85481 Query 42308 TAGt-ttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCT 42364 | | ||||||| | | ||| ||| |||||| || || | || || || ||| || Sbjct 85482 AAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CATCTCA 85538 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 ||||| || ||||| || || || ||||| || | |||||| || || | | ||| Sbjct 85539 GAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGA 85598 Query 42425 ACTTCTG-TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 ||||| | | |||||| ||| | |||||| || || || || || |||||||| Sbjct 85599 ACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAA 85657 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 ||| ||||| |||| ||||||||| | |||| || | | ||||||||| | Sbjct 85658 AAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTC 85717 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 | ||| ||||||| |||||||||||| | |||||||| |||| ||||| ||||| Sbjct 85718 TAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATA 85777 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTG 42662 | || ||| ||| || |||| ||||| || | ||||||||||| | | |||||| Sbjct 85778 TAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTTCAGTTGGTG 85836 >seq56 Length=107489 Score = 239 bits (264), Expect = 6e-58 Identities = 1011/1584 (64%), Gaps = 64/1584 (4%) Strand=Plus/Minus Query 71080 TTTTTGATCTCTTCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 71138 ||||| || |||| |||||| | ||| | | || ||| || ||| | || || ||| Sbjct 13787 TTTTTTATTTCTTTATTCCAGAGATTAAGTTTTAGT-AAATCTTTAATTAAATAAGAATT 13729 Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 || |||||||| ||||||| || ||| | || |||||||| || | ||||| Sbjct 13728 TACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATATTTGAAGTTAAAGGTTC 13669 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | | |||||| ||||||||||| | || ||||| || |||||| || || || Sbjct 13668 TATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGCAACAAA 13609 Query 71259 TAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAG 71318 || |||||||| ||||| | |||||| ||| | | | ||||||| | | Sbjct 13608 TAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATCTAATAA 13549 Query 71319 ATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATC 71377 ||| | ||| | || | ||| | | | |||| Sbjct 13548 ATCTGTTGGGGTGGTTTTATACATATCAAAATGTAATAGACCCTGACTCAATGGA-GATC 13490 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 | ||||||| ||||| | || | ||| |||| |||| ||| | || ||||| Sbjct 13489 CCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTACTTGATTCCAATGCAG 13430 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCCGGGCTATCAAAT 71496 ||||||||| ||||||||||| | |||||| | || | | ||||| ||||||||| Sbjct 13429 AATAATAAATAGTTTCGAAAATTTGCTTATTTA-ATAATCTAGCTTCTTCACTATCAAAT 13371 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 || ||| | |||||| | || |||||||||||||| |||||||| |||||||| Sbjct 13370 GGCATTCTTAGAATAATAAATACATCGGCTAATCCTTGAACACCAATACCCATAGGTCTA 13311 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 |||||| ||||| ||| || |||| | ||||| | | | ||||| | || Sbjct 13310 TGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGATATTTTGTTCTGTCTATTACCCTA 13251 Query 71617 TTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA 71676 | | |||| | || | ||||| || | || |||||||| | ||||||||| | | Sbjct 13250 TCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTAGTTTTATGAAATCAAATTTGTTA 13191 Query 71677 TCTATTACAAACACGTTCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 ||| ||| | | | ||| | | ||||| | ||||||||| |||| |||| || Sbjct 13190 TCT-TTAATGAAAGTTGGAAGACCTATTGATGCTAAATTACAAACAGCTATTTCATCAGG 13132 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | | || | ||||| | ||||||||| ||| || || | ||| | ||||| Sbjct 13131 CTTAGTTACTTCAACTATTTCTGCACAAAGATTAGAACATTTTATAGATCCAATATTTTT 13072 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 || ||| | | | ||||||| ||| ||||||| || || ||| |||| ||||| || Sbjct 13071 CTGGTTAGAATATCTATTACACGTATCTTTATAAATTATGAAAGGATTACCTGTTTCTAT 13012 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATATTCTTGTATCTCT 71914 || | ||| || |||| |||||| | | |||| |||| | || ||| || Sbjct 13011 TTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGCTTTTACAGTTCTTATTGCCAATCC 12952 Query 71915 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC--------GTCTCCCCAAGCATT 71966 ||| | ||| |||| | ||| | | | | ||||| || || || | Sbjct 12951 TTT-TGCTTCATATTCTTCATAAAGTTTTACAAACTCTTCATTGTGTTTCTCCCA----- 12898 Query 71967 GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCG 72026 ||| |||| | || || | | | | |||||| ||| || || | |||| Sbjct 12897 ---TAAATCAGGTGCTGTATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTTCGACTCT 12841 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||| || | ||| || | |||||| ||| ||||| |||||| ||||| || || Sbjct 12840 TTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGTC 12781 Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCA 72145 ||||| ||||||| | | || | || |||| || || |||||| ||||| | Sbjct 12780 TTTTCCAACATTCTTTCTTAATTCTA-AAAATTCATAGATTTCTACATGCCATGGTTCTA 12722 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||||| ||||| | || || | || |||||||| |||| || || | | || | Sbjct 12721 TGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGT-T 12663 Query 72206 TATTATAAACTCTCAA-CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA-- 72262 || || | | || ||| || | || || ||| ||| || | ||| Sbjct 12662 GCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGTGATCTTCCA-----CCTGTAGATT 12608 Query 72263 -TATAG------CTTCCACTGGCAC-----GAATATTGCTAATTGATAGACCTATTCCCC 72310 ||| | ||| || ||| |||||| ||||| ||||||| | Sbjct 12607 TTATTGTAGATCCTTTTGCTCTCACATTATGAATAT---TAATTCCTAGACCT------C 12557 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 |||| ||||||| || | || || ||| | ||||| | || || |||||| || Sbjct 12556 CTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAATATACCTTCTATAGAAT 12497 Query 72371 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | || | || | | |||||||| | || ||| | | | ||||| | ||||| Sbjct 12496 CCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTCTTTGTTCCGGAATTAA 12437 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 | || ||||| | ||||| |||| |||||| ||||| || ||| ||||||| | | Sbjct 12436 ACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAATTATACGTCTGTAACG 12377 Query 72491 CTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 | ||||| || | ||| ||| ||| || |||||||| || | || ||| |||| Sbjct 12376 CATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATAAAAACATCCTGTGGTC 12317 Query 72551 TTTCA-ACGAT--CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 72607 ||||| || || || |||| |||| ||||| || ||| ||| ||||||||| | | Sbjct 12316 TTTCATACCATAAATTTTTAT---TTTTTAACAAATACGATCTTTGCAAAGTTTTCACCC 12260 Query 72608 CAAAATAGTTGTATGAAAAGTCTC 72631 ||||||| || | | ||| |||| Sbjct 12259 CAAAATAATTTAAAGTAAAATCTC 12236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135659740720