Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq145 221 3e-52 seq267 196 1e-44 >seq145 Length=92206 Score = 221 bits (244), Expect = 3e-52 Identities = 579/873 (66%), Gaps = 24/873 (3%) Strand=Plus/Minus Query 268696 AGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGC 268755 |||||||||||| | ||||||||| | | | | ||||||| | || || ||||| Sbjct 85826 AGATAGATTTGTTTTGTTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCAGGC 85767 Query 268756 CGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA 268815 || | || |||||||||| |||||||||||| | ||| |||| ||| |||||||| Sbjct 85766 ACTTTCATCGTTTTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAA 85707 Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 | | || || |||||| |||||| |||| | | || |||||||||| Sbjct 85706 TGGTCTTAATGATGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATC 85647 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA--GAGGTACAGATTCCT 268933 ||||| || ||||| |||||||| |||| || || || || || || ||||| || Sbjct 85646 AGATGGGATTGTTAATGAAAATCTTTTAGAAAATTT-TG-CAGCGGAAGTTCAGATACCA 85589 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 ||||| |||||| |||| |||||||| ||| ||||||||||| ||||| ||||||||| Sbjct 85588 GAAGCTAGATGTGTTTATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTAC 85529 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT-- 269051 | ||||||| || ||||| || ||||| || || |||||| | ||| || Sbjct 85528 TCATTGCTAATAGAAAC--ATATATTAGAGAACAA-GAGAA-AAAAGATTTTTTATTTAA 85473 Query 269052 --CTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | || || || | | ||| ||| | || ||| || |||||||||||| Sbjct 85472 CGCAATTTCTACAATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAAC 85413 Query 269110 CGAT---AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 ||| | | || | ||| || |||| ||||| ||||||||||| || Sbjct 85412 GGATAAAAAATCATGTTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTT 85353 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 ||| || || |||||||| | || || ||| | || ||| | || | |||||||| | Sbjct 85352 CTTCTCTGGATCTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCT 85293 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 |||||||| || ||||| || || || || ||||| | || || || || ||| | Sbjct 85292 TACTTTCTCCAATGAATTAATCAGTAGAGATGAAGGAGTGCATGTTGAATTTGCATGTCT 85233 Query 269287 ATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAA---TTAT 269343 ||| | || | | | | | ||| | | | || | |||| ||||| ||| Sbjct 85232 CTTAAATGCTCACT---TAGAAGAAAAAGCACCATATGAAACAGTAATCGAAATAGTTAA 85176 Query 269344 AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTAT 269403 ||| ||| || | | ||| ||||||| | | ||| |||| | | | | || Sbjct 85175 AGA---AGCAGTAGCAATTGAACAAGAATTTGTTTCTGAAAGTCTACCCGTAAGTTTAAT 85119 Query 269404 CGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGT 269463 || ||||| | ||||| ||| | || || | || || |||| | | | || Sbjct 85118 TGGAATGAACTGTAAATCTATGTGTAATTACATAGAATTTGTGGCTGACAATCTCTTAGT 85059 Query 269464 GTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATAT 269523 | |||| || |||| | || ||| ||||||||| ||| ||| ||||| ||||| Sbjct 85058 TGATCTAGGATTCTCTAAACATTACAACACTGAAAATCCATTTGATTTCATGGAAAATAT 84999 Query 269524 ATCATTAGAAGGTAAGGCTAATTTCTTCGAGAA 269556 ||| ||| |||| || | |||||||| || || Sbjct 84998 ATCTTTACAAGGAAAAACCAATTTCTTTGAAAA 84966 Score = 199 bits (220), Expect = 9e-46 Identities = 187/237 (79%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 |||| ||| || ||||||| || | ||||| ||| || |||||||| ||||| ||||| Sbjct 32844 TTTAATTA--CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATT 32901 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||| || || |||||||| || || || |||||||| ||||| || | |||||||| Sbjct 32902 ATAATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTG 32961 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||||||||||||||||||||| ||||| || ||||||||||||| ||||| Sbjct 32962 ATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGA 33021 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||| || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 33022 ATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 33078 >seq267 Length=65599 Score = 196 bits (216), Expect = 1e-44 Identities = 186/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| || |||| || || | ||||| || | ||| | ||||||||||||||| ||||| Sbjct 33365 TTTCTTCTTTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATT 33306 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 || ||| | |||||||| ||||| | |||||| || ||||| || | || ||||| Sbjct 33305 GTAATCACTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTG 33246 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| |||||||||||||| || || || || |||||||| |||||||||| || ||| | Sbjct 33245 ATCTGGAGGTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGT 33186 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | ||| || |||||||| || ||||| || ||||| ||||| ||||||||||||||| Sbjct 33185 GGATTCGACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 33128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151392174532776