Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq57 122 1e-22 seq334 105 8e-18 seq405 95.1 1e-14 >seq57 Length=2400 Score = 122 bits (134), Expect = 1e-22 Identities = 274/404 (68%), Gaps = 16/404 (4%) Strand=Plus/Plus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||| | |||| |||| |||| | ||| |||||||||||||||| | || | ||| Sbjct 494 ATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTTT 553 Query 6900 AGCAA---TTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCC 6956 || | ||||| | | | || |||| ||| | |||||||||||| || ||||| Sbjct 554 TGCCACCATTAAA---GCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCC 610 Query 6957 CATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTATAGCATAAAATTG 7016 |||||| | ||||||||||| | ||||| ||| |||| || |||||||||| Sbjct 611 CATATCACCGGATCTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTG 670 Query 7017 ACACAATACATGACATGGAGGTAAAACAGCCTGATC---TATATCAGATGGATTCCAAGC 7073 | | || ||||||||| || || |||| || || | |||||||| || Sbjct 671 AAATAAACAATGACATGGTGG---AAGAGCCATTTCCCGTAATTGTTCGGGATTCCATGC 727 Query 7074 AGTCATTAA-AATACGTCTATCATTTGGATTTGTTTTTAATTTTGT-TATAATTATTTGT 7131 | || ||| || | |||| |||||| | || ||||| | | ||| ||||| Sbjct 728 -GACAATAACCATTCTTCTACTGGTTGGATCT-TTCTTAATAATATCTATCGCATTTTGT 785 Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAA 7191 || |||| | ||| | ||| |||| ||| | |||||| | ||| ||| ||| Sbjct 786 AACTGATTAACACCTTTTCCTGTGTAATCAGTTTTACAATTAACATATGGAGCATTGAAA 845 Query 7192 TGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTC 7235 || |||||||||| ||||| | |||||||| |||| ||||||| Sbjct 846 TGGTTCCATTGAAAACCATATACAGGACCTAGATCATCTTCTTC 889 >seq334 Length=56028 Score = 105 bits (116), Expect = 8e-18 Identities = 254/382 (66%), Gaps = 12/382 (3%) Strand=Plus/Minus Query 164604 TAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 |||||||||||||||||| || | ||||| |||||| | || ||| ||| ||| | Sbjct 19333 TAAAATTGTTAATGGTCCGGAGATTTTGAATAAATATATTGGAGAGAGTGAAAAAAATAT 19274 Query 164664 TAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGA--AAGCAGGTTTAGCTAGTAAA 164721 ||| | || || || || ||| |||| || || | || | | || | | Sbjct 19273 CAGAGAATTATTCGCAGAAGCAGAAAAAGATCAGAAAACCAAAAAAG---AGAGATCACC 19217 Query 164722 -TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATAATAT 164780 || ||| | ||| |||||||||| ||||| || | || |||| | || | | Sbjct 19216 GTTGCATATCATTATTTTTGATGAAATAGACGCGATATGTAAAAGTAGAGGAAGCACAAC 19157 Query 164781 TATTCATGATGCAG------TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATC 164834 || | || || || | || ||||| || ||| | ||||| |||||||||||||| Sbjct 19156 TACTGGTGTTGGAGACCAAGTAGTAAATCAATTACTTACAAAAATGGATGGTGTAGAATC 19097 Query 164835 CTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTT 164894 ||||||||||| | | |||| |||||||| || ||||| || ||| || || Sbjct 19096 ATTAAATAATATACTTGTAATAGGAATGACCAATAGATTGGATTTGATAGATAGCGCATT 19037 Query 164895 ATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACG 164954 |||| ||||||| |||| ||||| | || ||| | ||||| || | |||| | | Sbjct 19036 ATTAAGACCTGGAAGATTTGAATTACACATTGAAGTTCCTTTACCAGATGAGGAAGCAAG 18977 Query 164955 CCTTCAAATTTTAAAAGTTCAT 164976 | ||||||| || ||||| Sbjct 18976 AACTGAAATTTTTAACATTCAT 18955 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 165480 AAAAATATTTTCA--GATGCCCTTAAATTTGATTCTGCGTGTATTGTTTTAGATGATTTA 165537 ||||||||||| | || ||| ||||| || | |||||||| | |||||||| || Sbjct 18441 AAAAATATTTTTATGGACGCCTATAAATCCGAGTTATCGTGTATTATCTTAGATGAAATA 18382 Query 165538 GAACGATGGTTAGATTATGTACCCATCGGACCTAGGTTTTCTAATTCGATATTACAAACT 165597 ||| | |||||||||| |||| |||||||| ||||||||||| |||||||| || Sbjct 18381 GAATCCTTAGTAGATTATGTTGCCATTGGACCTAGATTTTCTAATTCTGTATTACAAGCT 18322 Query 165598 TTA 165600 || Sbjct 18321 ATA 18319 >seq405 Length=8842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 19331 AAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACT 19390 ||||| ||| || |||| | | ||||||| ||||||| ||||| ||||||||| | Sbjct 7738 AAAATAAAAGTACGATCATGCAGAATACCTCAAATAGGAGATAAATTTGCTTCTCGACAT 7797 Query 19391 GCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGAT 19450 | || ||||| || || |||| | | |||||||| ||||| ||||| ||||| Sbjct 7798 GGACAGAAAGGTACCATAGGAATGACATTAAGACAAGAAGAAATGCCATTTACCAAAGAA 7857 Query 19451 GGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCA 19492 || | | || ||| | ||||| ||||||||||| |||||| Sbjct 7858 GGATTGATACCAGATGTGATTATGAACCCACATGCATTTCCA 7899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595868856775200