Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq145 280 2e-70 >seq145 Length=92206 Score = 280 bits (310), Expect = 2e-70 Identities = 590/876 (67%), Gaps = 26/876 (3%) Strand=Plus/Plus Query 21200 ACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAAT 21259 ||||||||||| || ||||| || ||||||| || |||||| |||||| ||||||||| Sbjct 84960 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 85019 Query 21260 GGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACA 21319 |||||||||| || | |||| | || || || ||| | | || || ||| Sbjct 85020 GGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCCACA 85079 Query 21320 AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCT 21379 |||||||| || | |||||| ||| ||| ||||| || || || |||| || ||| | Sbjct 85080 AATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGACTT 85139 Query 21380 TTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGAT 21439 | | | ||| || ||| || | || ||||| || ||| | |||| || | Sbjct 85140 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTA--CTG--T 85195 Query 21440 GTACTAGGGGGATACAA----TAATTG----TTTAAACATCAAACATGCAAAATCACAAT 21491 | || || | | ||| || ||||| | ||||||||| ||| || Sbjct 85196 TTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCAAATTCAACAT 85251 Query 21492 GCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTC 21551 ||| |||||||| ||||| ||||||||||| || || || | ||| ||||||||||| | Sbjct 85252 GCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCAC 85311 Query 21552 TCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAG 21611 ||||| | ||| ||||| || ||||| | ||| || |||||||| || || ||| | Sbjct 85312 GTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTACGCACG 85371 Query 21612 CAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCC 21671 ||||||||| || || | | | | |||| ||||||| ||||||||| | || Sbjct 85372 CAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATAGTCC 85431 Query 21672 ATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT---TAAAAGATGAtttt 21728 | | ||| || | |||||| |||||| ||| || || ||||| || |||| Sbjct 85432 AGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTTT 85491 Query 21729 tttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATAT 21788 | || | | | || ||| | || ||| ||||||||||||| Sbjct 85492 TCTCTTGTTC-TCTAATATATGTTTCTATTAGCAATGAGTA--CATCTCAGAATGTATAT 85548 Query 21789 TTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAAT 21848 |||||||| ||| || ||||| |||| |||||| || |||| ||||| || | Sbjct 85549 TTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCGCTG 85608 Query 21849 -AAAATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAA 21906 ||||| | | ||| |||||||| || || ||||| || |||||||||||||| Sbjct 85609 CAAAATTTTCTAA--AAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCAA 85666 Query 21907 TATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTT 21966 | || ||||||||| || ||| | ||| | | |||||||| |||||| || Sbjct 85667 CACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCATT 85726 Query 21967 TGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCA 22026 ||||||||||||||||||| |||||||| | || |||| ||||| | | ||| Sbjct 85727 AGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATATAAATCCCA 85786 Query 22027 GATATCATTATATATTATTGGAAATATTACAAACCT 22062 ||| || ||| |||||||||| | ||||| || Sbjct 85787 TATACGATCGTATTTTATTGGAAACAAAACAAATCT 85822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897994223280