Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq145 322 6e-83 seq56 253 3e-62 >seq145 Length=92206 Score = 322 bits (356), Expect = 6e-83 Identities = 611/887 (69%), Gaps = 23/887 (3%) Strand=Plus/Plus Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 |||||||| | || | |||||| || ||||| ||||| |||| ||| |||||||||||| Sbjct 84948 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 85007 Query 32433 ATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 32492 |||||||| |||||||| | || ||| ||| ||||| | ||| | | Sbjct 85008 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 85067 Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552 | || || ||||||||||| || | ||| || ||| |||||||| || | | Sbjct 85068 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 85127 Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 32612 || || ||| ||| || ||||||||||||||| | || || ||| ||| | || | Sbjct 85128 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCT-TTA-ACTATTT 85185 Query 32613 C--TTACTGTTTCTTCACTCGGTGGATACAATAAATG----TTTAAACATCAAACATGCG 32666 | |||||||||| | | | | ||| || ||||| | |||||| Sbjct 85186 CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCA 85241 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 || || || | || || |||||||| |||||||| ||||| || || || || ||| Sbjct 85242 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 85301 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 |||| ||||| ||||||||||| |||||||| ||||| |||||||| |||||||| ||| Sbjct 85302 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 85361 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCAC 32843 ||||| |||||| ||||| | ||| || ||| | | | || |||||| Sbjct 85362 TCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCAT 85421 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 || || ||| || || || ||||| | || ||||| || || ||||| | | Sbjct 85422 TTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAA 85481 Query 32904 TAGt-ttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCC 32960 | | ||||||| | | ||| ||| |||||| || || | || || || ||| || Sbjct 85482 AAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CATCTCA 85538 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 ||||| || ||||| || ||||| ||||| || | |||||||| || | ||||| Sbjct 85539 GAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGA 85598 Query 33021 ACTTCTG-TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079 ||||| | | |||||| |||| | ||||||||| || || || || |||||||| Sbjct 85599 ACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAA 85657 Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33139 ||| ||||| |||| ||||||||| | |||| || | || ||||||||| | Sbjct 85658 AAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTC 85717 Query 33140 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199 | ||| ||||||| ||| |||||||| | |||||||| |||| ||||| ||||| Sbjct 85718 TAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATA 85777 Query 33200 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 33246 | || ||| || || |||| |||||||| | ||||||||||| Sbjct 85778 TAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTAT 85824 >seq56 Length=107489 Score = 253 bits (280), Expect = 3e-62 Identities = 989/1540 (64%), Gaps = 46/1540 (3%) Strand=Plus/Minus Query 62164 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62223 |||| || ||| | || | ||| || |||||||| ||||||| || ||| | || Sbjct 13752 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 13693 Query 62224 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62283 |||||||| || | ||||| | | | |||||| ||||||||||| | || || Sbjct 13692 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 13633 Query 62284 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62343 ||| || |||||| || || ||||| |||||||| || | || ||||||| || Sbjct 13632 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 13573 Query 62344 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62403 | | | | ||||||| | | ||| | || |||| Sbjct 13572 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 13513 Query 62404 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 | ||| | ||| ||||| ||||||| ||||| | || | | || |||| Sbjct 13512 TAGACCCTGACTCAATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAA 13453 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG--A 62521 |||| ||| | || |||||| |||||||| |||||||| || | |||||||| | Sbjct 13452 TTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTAATAA 13393 Query 62522 TCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 62581 ||| || | || ||||||||||| ||| | |||||| | || ||||||||| Sbjct 13392 TCTAGCTTCTTCA--CTATCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCT 13335 Query 62582 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62641 |||||||||||||| ||||||||||||||| ||||| ||| || |||| | ||| Sbjct 13334 TGAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGA 13275 Query 62642 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC 62701 || | | | ||||| | ||| | |||| | |||| ||||| || | || || Sbjct 13274 TATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTT 13215 Query 62702 AGTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATG--CAACAGATGCCA 62759 ||||| | ||||||||| |||| ||| | | ||| | | | | ||||| | Sbjct 13214 AGTTTTATGAAATCAAATTTGTTATCT-TTA-ATGAAAGTTGGAAGACCTATTGATGCTA 13157 Query 62760 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62819 ||||||||| |||| |||| || | | || | ||| || | ||||||||| Sbjct 13156 AATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAG 13097 Query 62820 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 ||| || || | ||| | ||||| || ||| | | | ||||||| ||| ||||||| Sbjct 13096 AACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAAA 13037 Query 62880 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 62939 ||||| ||| |||| ||||| || || | ||| || |||| |||||| | | ||| Sbjct 13036 TTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAG 12977 Query 62940 CCTTTA------TTATAG--ATTTGTATCTCTT-TTCTCTTTCGTATAGTGTATACAATC 62990 | |||| |||| | | | | | ||| | | ||| || ||| | ||||| | Sbjct 12976 CTTTTACAGTTCTTATTGCCAATCCTTTTGCTTCATATTCTTCATAAAGT-TTTACAAAC 12918 Query 62991 GTTCGAACTCGTCTC-CCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAAC 63049 | | || || |||| | || |||| | ||||| | | | | Sbjct 12917 TCTTCATTGTGTTTCTCCCATAAAT---------CAGGTGCTGTATCCGCAGAAAAAAGT 12867 Query 63050 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109 ||||| ||| | || | |||| |||||| || | ||| || | |||||| ||| | Sbjct 12866 GACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAAA 12807 Query 63110 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63169 |||| |||||| ||||| ||| || ||||| ||||||| | | || | || | Sbjct 12806 AATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAATTC 12748 Query 63170 ATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 ||| || || |||||| ||||| | ||||| ||||| | ||||| | || ||||| Sbjct 12747 ATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTCC 12688 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA-CATTGGAATAATACCAT 63287 ||| |||| || || | | || | || || | | || ||| || | || || Sbjct 12687 TCCTTGATTTACATACTTTGTTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGA 12629 Query 63288 TGGATGTACCATTGGTCCCTG-AGA---TATAG--CTTCCACTGGCACGAATATTACTAA 63341 ||| | ||| |||| ||| ||| | ||| | || | | |||| || Sbjct 12628 GTGATCTTCCA------CCTGTAGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAA 12575 Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 63401 | | |||| || ||||| ||||||| || | || || ||| | ||||| Sbjct 12574 TATTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGA 12515 Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63461 | || || |||||| ||| || | || | | |||||||| | || ||| | | Sbjct 12514 ATATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTAT 12455 Query 63462 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTA 63521 | ||||| | |||||| || ||||| | |||||| |||| |||||| ||| | || Sbjct 12454 TCTTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTA 12395 Query 63522 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63581 ||| ||||||| | || ||||| || | ||||||| ||| || ||||||| Sbjct 12394 AATTATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCA 12335 Query 63582 TTAACATGTGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 63640 | || | | ||| ||||||||| || || || || |||| ||||| || ||| || Sbjct 12334 TAAAAACATCCTGTGGTCTTTCATACCAT-AAATTTTTATTTTTTAACAAATACGATCTT 12276 Query 63641 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 | ||||||||| | |||||||| || | | ||| |||| Sbjct 12275 TGCAAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTC 12236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628657591200