Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq56 466 2e-126 seq145 376 3e-99 >seq56 Length=107489 Score = 466 bits (516), Expect = 2e-126 Identities = 1222/1862 (66%), Gaps = 55/1862 (3%) Strand=Plus/Minus Query 46966 ATTTGTCTTTTTCCACAGTAAACTTAAT----TGGATTACTCGCTGATTTTGTTCGTAA- 47020 |||||| || || || ||||| ||||| || |||||| ||| || || ||| Sbjct 14084 ATTTGT--TTGTCTACTGTAAATTTAATAGCCTGCATTACTGGCT-----TGGTCCTAAG 14032 Query 47021 ATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTT 47080 ||||||||| ||||||||||| | | |||||| |||||||||||||| | | Sbjct 14031 ATAATACATTCCAGTCTTTAATTGTTTTTTGTGTCCATAAAAATGCATACTAGTAAGCTG 13972 Query 47081 AGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACC 47140 ||||| | ||| | ||| ||||||||||||||| ||||||| | ||| Sbjct 13971 TGAATATGTGGGTGTAGCTATAAAAATATTAAGAGATTGTGATTGATCAACATATGGTGT 13912 Query 47141 TCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAAT 47200 ||||||||| || | |||||||||| | | || |||||| ||||| |||| | Sbjct 13911 TCTATCAGCAGCTAAATCTAAAATAGATTTCATTTTTAATTCCCATGCTGTTCTATACAA 13852 Query 47201 TTGTTTAATGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataat 47257 | |||||| |||| ||| | | | ||| ||| ||||| || |||| | | | Sbjct 13851 ATATTTAATTTCTTTTGGTATAGCTTCTATATCTTGGATAGAACCATCGTTCTGAACTAC 13792 Query 47258 tttgttttttaattcatttgaccaaagttttcgttc-agttaatgttt--ttaaAAGATG 47314 | |||||||| ||| || ||| || || ||| ||| ||| ||| ||||| | Sbjct 13791 TAGGTTTTTTATTTCTTTATTCCAGAGATTAAGTTTTAGTAAATCTTTAATTAAA---TA 13735 Query 47315 AGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATA 47374 || ||| |||| |||||| ||||||| || ||| | | |||| ||||| || | Sbjct 13734 AGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATATTTGAAGTTAA 13675 Query 47375 TGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||||||| |||||||| || |||||||| | || |||||||||||||| || Sbjct 13674 AGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGC 13615 Query 47435 AACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 ||| ||||| |||||| ||||||| |||| || | | |||||| Sbjct 13614 AACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATC 13555 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 | | ||||| ||| || | | |||| | || | | || | ||| | || Sbjct 13554 TAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAATAGACCCTGACTCAATGG 13495 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 ||| || | |||||||| |||| ||| || ||| || | |||| ||||| |||||| Sbjct 13494 AGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTACTTGATTCCAA 13435 Query 47615 TGCACTATAATATATTGTTTCAAATATTT--TTATGTTTAGATTCCTTGCTTCTGATGAT 47672 |||| |||||| || ||||| || |||| |||| || | | | || |||||| Sbjct 13434 TGCAGAATAATAAATAGTTTCGAAAATTTGCTTAT-TTAATAAT-CTAGCTTCTTCACTA 13377 Query 47673 TCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATT 47732 ||||| || ||| ||| || |||||||||||||||||||| || Sbjct 13376 TCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCTTGAACACCAATACCCATA 13317 Query 47733 GGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATA 47792 |||||||| | ||||| | || |||| || ||||||||| || | ||||| Sbjct 13316 GGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGATATTTTGTTCTGTCTATT 13257 Query 47793 ATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC 47852 | ||| | | || || ||| ||| ||| | |||||||| Sbjct 13256 ACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTAGTTTTATGAAATCAAAT 13197 Query 47853 TTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCA 47912 ||||||| | ||| || | ||| |||| ||||||| |||||| ||||||| ||| Sbjct 13196 TTGTTATCTTTAATGAAAGTTGGAAGACCTATTGATGCTAAATTACAAACAGCTATTTCA 13137 Query 47913 TTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972 | || ||||| || | |||||| ||||| |||||| |||||| |||| || | | Sbjct 13136 TCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAGAACATTTTATAGATCCAATA 13077 Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032 |||| || ||| | ||||| | || || |||| || ||||| | || ||| Sbjct 13076 TTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAAATTATGAAAGGATTACCTGTT 13017 Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCT 48092 ||||| || | |||||| || | |||||||| | ||| ||| |||| || Sbjct 13016 TCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGCTTTT---ACAGTTC----- 12965 Query 48093 TTATT----ATCAT----GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACA 48144 ||||| ||| | ||| |||| ||| | || |||| || | ||| Sbjct 12964 TTATTGCCAATCCTTTTGCTTCATATTCTTCATAAAGTTTTACAAACTCTT---CATTGT 12908 Query 48145 CATTATC---TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTT 48201 || || ||| |||| | || | | | | | ||||||||| | || | || Sbjct 12907 GTTTCTCCCATAAATCAGGTGCTGTATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTT 12848 Query 48202 TTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTA 48261 ||||| |||| |||| |||||||| |||||| ||| ||||||||| || ||||||| Sbjct 12847 CGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTA 12788 Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 ||| || || ||| |||| || | | ||| | ||| || || || ||||||||| Sbjct 12787 CTTCGTCTTTTCCAACATTCTTTCTTAATTCTAAAAATTCATAGATTTCTACATGCCATG 12728 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381 |||||| |||| ||||||| |||| |||| || || |||||||||| || ||| | | Sbjct 12727 GTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTG 12668 Query 48382 CAGTATTGTTATAAACTCTTAA-CATTGGGACAATACCATTTGATATACCATTGGTTCCC 48440 || | || || | |||| ||| || |||| || |||| | ||| || Sbjct 12667 TTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGTGATCTTCCACCTGTAGAT 12609 Query 48441 GAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATT 48500 || | ||| | ||||| | |||| ||| ||| |||| ||| ||||| || Sbjct 12608 TTTATTGTAGATCCTTTTGCTCTCACATTATGAATATTAATTCCTAGACCTCCTGCACTT 12549 Query 48501 TTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATC 48560 |||||||| |||||||| ||| | ||||| | || ||||||||| ||| ||| | Sbjct 12548 TTAGATATAAGAGCACAGTTTTTCACAGTATCGAATATACCTTCTATAGAATCCTCTTTG 12489 Query 48561 ATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTT 48620 |||| || |||||||| | || ||| || ||||| |||||||| ||||| Sbjct 12488 ATATCCAAAAGAAAACATGAACTCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTA 12429 Query 48621 GGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCT 48680 || | ||| |||||||| |||| | || | || ||||| || | | || |||| Sbjct 12428 GGTGTTGCGTGAATAAAATATTTTTTAGACATTAAATTATACGTCTGTAACGCATCATCT 12369 Query 48681 ATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-AC 48739 || || | ||| || ||| | ||||||||| || | || || ||||||||| || Sbjct 12368 ATTTCTTCATCATGAATTTCTAAGGCTACACGCATAAAAACATCCTGTGGTCTTTCATAC 12309 Query 48740 AAT--TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 || || |||| |||| || | ||| ||| ||| ||| ||||| | |||||||| Sbjct 12308 CATAAATTTTTAT---TTTTTAACAAATACGATCTTTGCAAAGTTTTCACCCCAAAATAA 12252 Query 48798 TT 48799 || Sbjct 12251 TT 12250 >seq145 Length=92206 Score = 376 bits (416), Expect = 3e-99 Identities = 627/893 (70%), Gaps = 26/893 (3%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 || ||||| || |||||||||||||||||||| |||||||| | ||| |||||| |||| Sbjct 84948 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 85007 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || |||||||||||||||| || || ||| |||||||| || | || || Sbjct 85008 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 85067 Query 18793 CTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTA 18852 | || || ||||||| || || | ||| | ||| |||||||| ||||| | Sbjct 85068 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 85127 Query 18853 ACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGAT 18912 || ||||| || | || |||||||||||| || |||||| ||| | || Sbjct 85128 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCG 85187 Query 18913 ACAACTCTATCTTCATTAGGAGGGTATAG----AAGATG----TTTAAACATCAAACATG 18964 | ||| | ||||| || | | | ||| || ||||| | ||||| Sbjct 85188 ATTACTGT---TTCATATGGTGCTTTTTCTTCTAAG-TGAGCATTTAAG----AGACATG 85239 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||| ||| ||| | ||| || |||||||| || |||||||| || || || | ||| | Sbjct 85240 CAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTG 85299 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||| | ||| | |||||| | ||||||||| || ||||| |||||||| ||||| |||| Sbjct 85300 GCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATAC 85359 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 ||||||| ||||| |||| || |||| || ||| | | |||| |||| Sbjct 85360 CTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCC 85419 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||| | ||| || || || ||||| | ||| ||||| || | ||||||| Sbjct 85420 ATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATA 85479 Query 19205 GATACATACGCTCATCTGT--ATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 | | || | | ||| | ||| ||| ||||| ||||| | || |||||| || Sbjct 85480 -AAAAAT-CTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCTC 85537 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||| ||||||||||| || || ||||| |||| |||||| ||||||| |||||| Sbjct 85538 AGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTG 85597 Query 19323 TACTT-CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 |||| | || |||||| |||| | | |||||||||||| || ||||| ||||||| Sbjct 85598 AACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAA 85656 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAGGTTAA-TGTATTCCAATC 19439 ||||||| || |||| | ||||||||| ||||||| | | |||| ||||||||| Sbjct 85657 AAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCA--TTAAGACCATTCCAATC 85714 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 | | ||| ||||||||||||||||||||| | |||||||| || | ||| | || Sbjct 85715 GTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTT 85774 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 ||| | | ||||||| | |||| ||| ||||| | ||||||||||| || Sbjct 85775 ATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTT 85827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105834876080