Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq145 370 1e-97 >seq145 Length=92206 Score = 370 bits (410), Expect = 1e-97 Identities = 625/894 (70%), Gaps = 32/894 (4%) Strand=Plus/Plus Query 36888 TGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCC 36947 || |||||| | |||| | |||| || ||||| || ||||||| || |||||||||||| Sbjct 84948 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 85007 Query 36948 ATAAAATCAAATGGATTA-----GATGTATTATATATAGTACTACATGATAATTCCTTCA 37002 || |||||||||||||| | |||| | | || || | | | ||| | | | Sbjct 85008 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAA-TCCTAGATCAAC---TAA 85063 Query 37003 GAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTA 37062 || | | || || |||||||||||||| |||||||| || | |||| || ||||||| Sbjct 85064 GA-GATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTA 85122 Query 37063 GTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTA 37122 |||| || | || || |||| || ||| ||| ||| || |||||||||| Sbjct 85123 AACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTA 85182 Query 37123 TATTAACAATAACTTCTTCAGTTGGGGGATATTTT---AAAT----ATTTAAACAATAAA 37175 | | | || ||| |||| ||| | | || | || | |||||| | | Sbjct 85183 TTT---CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGA 85235 Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 |||||||| ||| ||| | |||||||||||||| || |||||||| || || || | Sbjct 85236 CATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGA 85295 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 ||||||||||| || | |||||||| ||| ||||| | ||||||||||||||| |||||| Sbjct 85296 CCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAA 85355 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 |||||||| || |||||||| | | | |||| | ||| ||| | | ||| | Sbjct 85356 ATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTT 85415 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||||||| | ||||| ||||| || ||||| | ||||| |||||| || Sbjct 85416 ATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTA 85475 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 || | ||| | ||||| || ||| | ||||| || || ||||| || ||||| Sbjct 85476 AATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATC 85535 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||||| || |||||||| || ||| || || ||||||| ||| |||||||| | || Sbjct 85536 TCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATC 85595 Query 37536 TGAACAT-CGTTAAAAAACCTCTTAGCTAAG-TTTTCATTAACTATCCCATCACTAGCTG 37593 ||||| | || | |||| | || ||| ||||||||||| |||||||| |||| Sbjct 85596 TGAACTTCCGCTGCAAAA--TTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTG 85653 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAATTTTTTCCA 37651 |||| || || | ||||| ||||||||||||||||||||| || | | ||||| Sbjct 85654 CAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGA--CCATTCCA 85711 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711 ||| | | ||| || |||||||| ||||| ||| | |||||||| || | ||| | Sbjct 85712 ATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTG 85771 Query 37712 TTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTATC 37765 ||||| | ||| ||| || | || ||||||||| | ||||||||||| Sbjct 85772 CTTATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATC 85825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592313675528880