Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq56 120 4e-22 seq378 93.3 6e-14 seq278 87.8 2e-12 >seq56 Length=107489 Score = 120 bits (132), Expect = 4e-22 Identities = 322/487 (66%), Gaps = 14/487 (3%) Strand=Plus/Plus Query 78614 CTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCGTATATGCTATACAAA 78673 || |||||| | || || ||| |||| ||| || || | || | || | || ||| Sbjct 12985 CTTTGGAAAACGATAATTGAAACACAAATAGAAACAGGTAATCCTTTCATAATTTATAAA 13044 Query 78674 GACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCTT 78733 || | ||||| ||| | |||||||| || || | || || ||| | ||||| ||| Sbjct 13045 GATACGTGTAATAGATATTCTAACCAGAAAAATATTGGATCTATAAAATGTTCTAATCTT 13104 Query 78734 TGCACAGAAATTCTGGAATACACGGATAAGA---ATGAAACAGCTGTATGTAATCTAGGG 78790 || ||||||| | ||| || |||| |||||| |||||| |||||| ||| Sbjct 13105 TGTGCAGAAATAGTTGAAGTAAC---TAAGCCTGATGAAATAGCTGTTTGTAATTTAGCA 13161 Query 78791 TCTATCGCTCTACCAAAGTTTGTTGATCGAGAATTAAAGACATTTGATTATTCAAAGCTC 78850 || || | ||| |||| || || | ||| || | |||||||| ||| || Sbjct 13162 TCAATAGGTCTTCCAACTTTCATTAA---AGAT---AACAAATTTGATTTCATAAAACTA 13215 Query 78851 CACGAAATTACAAAAATCGTAACTAAAAATTTAAATCGTGTAATTGACCGTAACTACTAC 78910 | || || |||| | | |||||||| || | ||||| ||| | | | || Sbjct 13216 AAAGAGATAGTAAAAGTTCTTGTAAAAAATTTGGATAGGGTAATAGACAGAACAAAATAT 13275 Query 78911 CCAGTCGAGACTGCTAAATATTCTAATATGAAACATAGACCAATTGGTCTAGGTGTTCAA 78970 ||||| || ||||| | |||||||| ||||||||| || ||| | ||||||||| Sbjct 13276 CCAGTAGAAGAAACTAAAAAAAGTAATATGAGACATAGACCTATGGGTATTGGTGTTCAA 13335 Query 78971 GGATTGGCAGATGTATTCAACTTGTGTGGTCTTCCCTTCGATTGCGAAGATTCAAGGACT 79030 ||||| || |||||||| | | | | || || ||| | ||||| | | || | Sbjct 13336 GGATTAGCCGATGTATTTATTATTCTAAGAATGCCATTTGATAGTGAAGAAGCTA-GATT 13394 Query 79031 A-TGAATGCTCATATTTTCGAGACTATTTATCATGCAGCTTTAGAAGCAAGTTCAGAACT 79089 | | ||| || |||||||| ||||||||| || | || || ||| ||||| | ||| | Sbjct 13395 ATTAAATAAGCAAATTTTCGAAACTATTTATTATTCTGCATTGGAATCAAGTACTGAATT 13454 Query 79090 TGCTGAA 79096 || ||| Sbjct 13455 AGCAGAA 13461 >seq378 Length=27305 Score = 93.3 bits (102), Expect = 6e-14 Identities = 184/273 (67%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || ||| | || |||||||| || || |||| |||||||||| || ||||| | || Sbjct 14761 GCTGTTATTACAGTACCTGCATATTTTGATGATGCACAACGACAAGCTACAAAAAATTCT 14702 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 || | || || || | | | |||| |||||||||||||| || ||| | Sbjct 14701 GCAAGAGTGGCTGGAATAGAGGTTGCACGTGTTATAAATGAACCAACAGCTGCAGCACTG 14642 Query 195830 GCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || |||||| | |||||| | || | || || ||| | | |||| | ||| Sbjct 14641 GCATATGGTGTTGACAAGGATAA------AAATGGAATTGTCGCAGTGTATGATTTAGGT 14588 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 ||||| || |||||||| ||| || | | | | | |||| ||||||||||||| | Sbjct 14587 GGTGGAACATTTGATGTTTCAATTTTGGAGTTAAATGATGGTGTATTCGAAGTAAAAAGT 14528 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGAT 195982 || | ||| |||| || ||||| || |||||| Sbjct 14527 ACATCAGGTAATACACAGCTAGGAGGCGAAGAT 14495 >seq278 Length=64959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 259/392 (66%), Gaps = 13/392 (3%) Strand=Plus/Minus Query 182759 CAAGCCCTTAATATGCGAACCATCGTTATCAGCATCAGTCATAATCATGAGACGACCATA 182818 ||| || || ||||| |||||||| | ||| ||| |||||||| || | | | ||||| Sbjct 10566 CAATCCTTTGATATGGGAACCATCATGATCTTGATCCGTCATAATTATAATATGCCCATA 10507 Query 182819 CCGAAGCTCGGATACATCTTTGTATTCTTTTCCTTGTTGGAGACCCAATATTTTCTTTAG 182878 | | || |||||||||||||||||| ||||||| | || | |||||| || | Sbjct 10506 TCTTAAATCTTTTACATCTTTGTATTCTTTACCTTGTTTTAATCCTATTATTTTTTTAAT 10447 Query 182879 GTCGTTGAACTCTTGATTTCCAGTCAACTGGGCCACAGATGCATCTCGGACATTCTTACA 182938 | | || |||| |||| | | | ||| ||| || ||||| ||||| | | | Sbjct 10446 ATTTATCAATTCTTTATTTTCCATAATCTGTTTGTGAGAAGCTTCTCGTACATT-TAAAA 10388 Query 182939 CTTTCCC---CGAAGTGGAAAGACGCCGTAATGATCCCTTCCAACAACAGAGAGGCCAGC 182995 ||| || | || ||||| || || |||||||| |||| |||| | | || | Sbjct 10387 GTTTACCTTTCAAA--GGAAATACACCATAATGATCTTTTCCTACAAGACCTATACCTGA 10330 Query 182996 GACAGCGAGTGTCTTTGCCGAGTCACCCTCTGTCACGATGAGTGTACACTTAGAAGATTG 183055 | | | | |||||| || || || || ||||| | || | | || || |||| | Sbjct 10329 CATAACAAATGTCTTAGCTGAATCTCCTTCTGTTAAAATTAAAGAGCATTTGTAAGAATC 10270 Query 183056 GGCTGTCCCAGCTTTGTTTGCGTCATCAAGCTTGGGAATA-CCAGTAATTTTGGAC-TTT 183113 | || || ||| |||| || || || | ||| |||| ||| ||| | || ||| Sbjct 10269 AACAGTTCCTGCTCTGTTAGCATCTTCTAACTTTTCAATATCCA--AATATCTAACATTT 10212 Query 183114 CGAGCTCCACCATCCGTTTTTGAAAGTTCTTT 183145 || |||||||||||||| | |||||| Sbjct 10211 TTAG---AACCATCCGTTTTTGTTAATTCTTT 10183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657858929775840