Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq145 185 2e-41 seq267 165 1e-35 >seq145 Length=92206 Score = 185 bits (204), Expect = 2e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| |||||||||| |||| | ||| | |||||| |||| || || ||||||| Sbjct 32844 TTTAATTACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTAT 32903 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | ||| ||| |||||| ||| || | |||||||| ||||| || ||||||||||||| Sbjct 32904 AATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGAT 32963 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | |||||||||||||||||||| ||||| || | |||| |||| |||||||| ||| Sbjct 32964 CTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAAT 33023 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || ||||| ||||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 33024 TTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 33078 >seq267 Length=65599 Score = 165 bits (182), Expect = 1e-35 Identities = 202/273 (74%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || ||||||| ||| |||| ||| | ||||| ||||| ||||| || || Sbjct 33355 CCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTC 33296 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||||| ||| || |||||||| || ||||| || ||||| |||||||| |||||| Sbjct 33295 AATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGT 33236 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || ||||||||||| | ||| | |||| || | |||| || || ||| Sbjct 33235 ATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACT 33176 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattttattagtaaaa 193373 ||||| || || || || || || |||||||| |||||||| |||||| ||||| Sbjct 33175 TCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT---GGGGTAAA- 33120 Query 193374 taattattttaaataatatatactttatatttt 193406 |||| | | ||| |||| ||| |||| |||| Sbjct 33119 -AATTTTGTAAAAAAATAAATA--TTATTTTTT 33090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649654323040