Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq145 251 1e-61 seq267 122 2e-22 >seq145 Length=92206 Score = 251 bits (278), Expect = 1e-61 Identities = 542/820 (66%), Gaps = 9/820 (1%) Strand=Plus/Plus Query 38835 TGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTC 38894 |||||||| | ||| ||||||| || || || |||||||||| ||| ||||| | | Sbjct 84948 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 85007 Query 38895 ATAAAATCAAATGGATTTTTGGTATTATAATATTTTTC---TCCTATCAATACATATAAT 38951 || |||||||||||||||| || || |||| ||| ||||| || || ||| Sbjct 85008 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAG--AT-CAACTAAG 85064 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 | | || ||||||||||| | || | |||| ||| ||| ||||| || | ||| Sbjct 85065 AGATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAA 85124 Query 39012 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 39071 | | |||| ||| || |||||||| ||| ||| |||| |||| ||||| ||| Sbjct 85125 CTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATT 85184 Query 39072 ataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCA 39131 |||| | | | || | ||| | || | ||| |||| || | ||||||| Sbjct 85185 TCGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGA---GCATTTAAGAGACATGCA 85241 Query 39132 AAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 39191 || || ||| | ||||| || ||| || |||||||| ||||| | |||||| Sbjct 85242 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 85301 Query 39192 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 39251 |||||||| | ||||||||||| ||||| ||||||||| | ||| ||||| ||||| Sbjct 85302 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 85361 Query 39252 TCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAA 39311 || || ||||||||||| |||||||||| |||| | |||| | ||| ||||| Sbjct 85362 TCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCAT 85421 Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 39371 || || | ||| |||||||| ||||| || | ||||| | || || |||||||| Sbjct 85422 TTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAA 85481 Query 39372 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAA 39431 || || ||||| |||||| Sbjct 85482 AAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGAA 85541 Query 39432 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACT 39491 |||| | ||| || |||||| ||| ||||| || ||||||| ||||||| Sbjct 85542 TGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACT 85601 Query 39492 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 39551 || | || ||| | | ||| ||| ||||| ||||| |||||||| || ||| Sbjct 85602 TCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAAT 85661 Query 39552 GCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 39611 || || ||||| | ||||||||| |||||| ||| || | | | |||| || | | Sbjct 85662 GCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAA 85721 Query 39612 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATG 39651 || || ||||||||||||||||| |||||||| |||| Sbjct 85722 TCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATG 85761 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||||||||| | || |||||||||||| || |||| || || ||||||||||| Sbjct 32850 TACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGC 32909 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 ||| | || | || || | ||||| || ||||| || ||||||||||| || || | Sbjct 32910 TTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAG 32969 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 |||||||||||||||| ||||| ||| |||||||| ||||||||| || ||||| Sbjct 32970 GTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTA 33029 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| |||||||| ||||| || || | ||||||| || |||||||| Sbjct 33030 CTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 33078 >seq267 Length=65599 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | |||| ||||| ||||| ||||| || | || | || ||| Sbjct 33337 ACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACCATCTTCC 33278 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||||||||| ||||| || ||||| ||||| || || ||||||||||| || |||||| Sbjct 33277 AATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCCTTCCTTGTCTTGT 33218 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| ||| | || | ||||| |||||||| || || || || Sbjct 33217 ATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGTGATTGTCTTG 33158 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||||| | |||||||||||| Sbjct 33157 CCCGTAAGCGTTTTGACAAATATCTGCATT 33128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131225407600