Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq57 140 4e-28 >seq57 Length=2400 Score = 140 bits (154), Expect = 4e-28 Identities = 322/480 (67%), Gaps = 19/480 (4%) Strand=Plus/Minus Query 172518 AGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAA 172577 ||| |||||| |||| |||| || | ||||| |||||||||| ||| |||| | Sbjct 892 AGAGAAGAAGATGATCTAGGTCCTGTATATGGTTTTCAATGGAACCATTTCAATGCTCCA 833 Query 172578 TATATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAA---CT 172634 ||| | | ||| | || |||||||||||| |||| || | || ||| |||| | Sbjct 832 TATGTTAATTGTAAAACTGATTACACAGGAAAAGGTGTTAATCAGTTA---CAAAATGCG 776 Query 172635 ATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTA 172694 || ||| | | | || | ||| |||||||| ||| | |||| |||||| Sbjct 775 ATAGATATTATTAAGAAAGATCCAACCAGTAGAAGAATGGTTATTGTCGCATGGAATCCC 716 Query 172695 CCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCAGa 172754 ||| | |||||| |||||| || || ||| |||| |||||||||||| | Sbjct 715 GAACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC-GC 657 Query 172755 aaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTA 172814 | ||| || ||| ||||| |||||||||||||| | |||| | |||||||| ||| Sbjct 656 TGATAATAAA--TTAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTA 599 Query 172815 CCTTATAATATTGGATTTTATTCATTTTT---AATACTTGTG--TTAAGTAAATGGTGCA 172869 |||| |||||||| ||||||| || | || | ||| |||| | ||| Sbjct 598 CCTTTTAATATTGCTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGG---- 543 Query 172870 ATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATG 172929 ||| ||||| | ||||| ||| |||| || |||||||| | ||| ||||| Sbjct 542 -ATTAGAACCAGGTGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACA 484 Query 172930 TTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTTA 172989 |||| || |||| ||| | |||||| ||| ||| | || || || ||||||||| Sbjct 483 TTGAGCCAATAAAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632486263617360