Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq57 131 2e-25 seq405 98.7 1e-15 seq256 89.7 7e-13 >seq57 Length=2400 Score = 131 bits (144), Expect = 2e-25 Identities = 321/480 (67%), Gaps = 19/480 (4%) Strand=Plus/Minus Query 168645 AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAA 168704 ||| |||||| |||| ||||||| | ||||| |||||||||| ||| |||| | Sbjct 892 AGAGAAGAAGATGATCTAGGTCCTGTATATGGTTTTCAATGGAACCATTTCAATGCTCCA 833 Query 168705 TATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACT--- 168761 ||| || | ||| | || |||||||| ||| |||| || | || ||| |||| | Sbjct 832 TATGTTAATTGTAAAACTGATTACACAGGAAAAGGTGTTAATCAGTTA---CAAAATGCG 776 Query 168762 ATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTA 168821 ||| ||| | | | || |||| | ||||||||| | ||| ||| || Sbjct 775 ATAGATATTATTAAGAAAGATCCAACCAGTAGAAGAATGGTTATTGTCGCATGGAATCCC 716 Query 168822 CCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTAAGG 168881 |||| | |||||| |||||| || ||||| |||| | ||||||||||| | Sbjct 715 GAACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC-GC 657 Query 168882 AAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTA 168941 | ||| ||| || ||||| || ||||||||||| | |||| | ||||| |||||| Sbjct 656 TGATAATAAAT--TAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTA 599 Query 168942 CCTTATAATATTGGATTTTATTCATTTTTAAC---ACTTGTG--CTAAGTAAATGGTGTA 168996 |||| |||||||| ||||||| || | | | | ||| |||| | ||| Sbjct 598 CCTTTTAATATTGCTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGG---- 543 Query 168997 ATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATG 169056 ||| || || || | ||||| ||| |||| || |||||||| | ||| || || Sbjct 542 ATTAGA-ACCAGGTGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACA 484 Query 169057 TTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATTTA 169116 |||| || |||| ||| | |||||| ||| ||| | || || || ||||||||| Sbjct 483 TTGAGCCAATAAAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 424 >seq405 Length=8842 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCAC-AGAT- 192983 || ||| ||| |||| ||| ||| |||||| |||||||| | || ||||| |||| Sbjct 7215 AATGGATACATTATCAAATATTTTATTTTATCCTCAAAAACCTTTGGTAACCACGAGATC 7274 Query 192984 ATTGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || || ||| || | ||| |||| | | | ||| || || || ||||| || Sbjct 7275 AATGGAATATCTAA-AAGTCAGAGAATTACCTATA-GGTCAAAACGCAATAGTTGCAGTA 7332 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 193103 || || |||||||| |||||||||||||| ||||||||| | ||| | | | || || Sbjct 7333 GCATGTTATACTGGATATAATCAAGAAGATAGTATTATTATGAATCAGAGTGCAATAGAT 7392 Query 193104 AGAGGATTATTT 193115 ||||| |||||| Sbjct 7393 AGAGGTTTATTT 7404 >seq256 Length=67767 Score = 89.7 bits (98), Expect = 7e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCT 52049 ||||| |||||||||||||| |||||||||||||||||| | || ||| ||||| | Sbjct 28142 TATAACGCTGATTTTGATGGTGATGAAATGAATTTACATATGCCACAAACATATAATACA 28201 Query 52050 ACTGCTGAATTACAAGAATTAA 52071 | ||||||||||||||||||| Sbjct 28202 AAAGCTGAATTACAAGAATTAA 28223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635174249438160