Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq57 125 9e-24 seq405 86.0 8e-12 >seq57 Length=2400 Score = 125 bits (138), Expect = 9e-24 Identities = 314/473 (66%), Gaps = 7/473 (1%) Strand=Plus/Minus Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605 || |||||| |||| |||| || | ||||| |||||||||| ||| |||| || Sbjct 891 GAGAAGAAGATGATCTAGGTCCTGTATATGGTTTTCAATGGAACCATTTCAATGCTCCAT 832 Query 180606 ATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAG 180665 || || | ||| | || | || | || ||||| | | || ||| | | |||| Sbjct 831 ATGTTAATTGTAAAACTGATTACACAGGAAAAGGTGTTAATCAGTTACAAAATGCGATAG 772 Query 180666 AAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGTTGGAATGTATCAC 180725 | | ||| || || |||| | ||||||| | || | |||||| || Sbjct 771 ATATTATTAAGAAAGATCCAACCAGTAGAAGAATGGTTATTGTCGCATGGAATCCCGAAC 712 Query 180726 AATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAATA 180785 |||||| || |||||||||||||||||||| ||||| | ||||||||||| ||| Sbjct 711 AATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCTGATA 652 Query 180786 AAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCAT 180845 | | | ||| ||| | || ||||||||||| | ||| | ||||| || ||||| | Sbjct 651 A---TAAATTAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTACCTT 595 Query 180846 ATAATATTGCTTTCTATTCA-TTTTTGGTAT-GTGTTCTCTCAAAGTGGTGCAATTTAAC 180903 |||||||||| |||||| || ||| | | || | | || | || | ||| Sbjct 594 TTAATATTGCTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGGA--TTAGA 537 Query 180904 CCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTAACCATATTGACCA 180963 || || ||||||| || |||| || ||||||||| ||||| || || ||||| | Sbjct 536 ACCAGGTGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAGCC 477 Query 180964 ATTAAAAATTCAATTAAGCAGAAACCCTTACAAGTTTCCAAAAGTAAAATTTA 181016 | |||||| ||| | |||| ||||| || || ||| | ||||||| Sbjct 476 AATAAAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 424 >seq405 Length=8842 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 201064 TATCACATACCTTAAATTATCCTCAAAAACCACTTGTTACAACT-GA-CATTGCAGAATT 201121 ||||| ||| ||| ||||||||||||||| | || || || || || || | || Sbjct 7226 TATCAAATATTTTATTTTATCCTCAAAAACCTTTGGTAACCACGAGATCAATGGAATATC 7285 Query 201122 TAATGGTCTAAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACAC 201181 ||| ||| | |||| || | ||| || ||||| || ||| | |||||||| || Sbjct 7286 TAAAAGTCAGA--GAATTACCTATAGGTCAAAACGCAATAGTTGCAGTAGCATGTTATAC 7343 Query 201182 TGGATACAATCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||||| ||||||||||||||| ||||| | ||| | | || || ||||||||||| Sbjct 7344 TGGATATAATCAAGAAGATAGTATTATTATGAATCAGAGTGCAATAGATAGAGGTTTATT 7403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655276543398000