Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq278 174 1e-37 seq145 167 2e-35 seq378 114 1e-19 seq23 107 1e-17 seq100 102 6e-16 seq256 89.7 4e-12 >seq278 Length=64959 Score = 174 bits (192), Expect = 1e-37 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 400249 GAAAAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATT 400308 ||||| ||| | ||||| ||| ||||||||| || || ||||| | ||||| Sbjct 10234 GAAAAGTTAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAATGCTCTTTAATT 10293 Query 400309 TTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGA 400368 || ||||| |||||||||||||| ||||| | |||||| || | | || | |||| | Sbjct 10294 TTAACAGAAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGTCTTGTAGGAAAA 10353 Query 400369 GATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCT 400428 ||| ||||||| || || || | | ||| |||||||| ||||| | || ||| || Sbjct 10354 GATCATTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGAGAAGCTTCTCAC 10413 Query 400429 aaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAA 400488 ||| | ||| || ||| | ||| | | | || |||||||| | ||| | ||||| Sbjct 10414 AAACAGATTATGGAAAATAAAGAATTGATAAATATTAAAAAAATAATAGGATTAAAACAA 10473 Query 400489 GGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGAT 400548 || |||| || | ||| | |||| |||| ||||||| |||||| ||| | | ||| Sbjct 10474 GGTAAAGAATACAAAGATGTAAAAGATTTAAGATATGGGCATATTATAATTATGACGGAT 10533 Query 400549 CAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTT 400592 |||||| |||||| | ||||||||||||||| | || ||||| Sbjct 10534 CAAGATCATGATGGTTCCCATATCAAAGGATTGTTGATTAATTT 10577 >seq145 Length=92206 Score = 167 bits (184), Expect = 2e-35 Identities = 546/825 (66%), Gaps = 64/825 (8%) Strand=Plus/Plus Query 161002 TTTCTCAAAGAAATTGGCTTTGACAA--AAACGTCGAtttttttCATGTATTCGAATGGA 161059 ||| ||||||||||||| ||| | ||| | || |||| |||| | || |||||| Sbjct 84965 TTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGAT--ATATTTTCCATGAAATCAAATGGA 85022 Query 161060 TTATCAACATTG-AATTTTTTGCGATAACCAAGATCTAC-AAGTAATCTGTCAGCAACAT 161117 || ||| ||| ||| ||| | || | || ||||| || ||| || ||||||| ||| Sbjct 85023 TTTTCAGTGTTGTAATGTTTAGAGA-ATCCTAGATCAACTAAGAGAT-TGTCAGCCACAA 85080 Query 161118 ATTTAATATATTGAGACATTAGTTCAGAATTCATACCAAG-AAGTTTACACGGAAGAGAA 161176 ||| || || | | |||| || | | ||||| |||| || |||| || ||| Sbjct 85081 ATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACG-GGTAGACTT 85139 Query 161177 TCATTAATAAATTCTTCTTCAATTTCAATCGCTTCGTCAATAATTTGGTAAACAACAGAT 161236 ||| || |||||||| ||||||| | | ||||| | || |||| | || Sbjct 85140 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTAC------- 85192 Query 161237 TCTTTCAAACGAT---TATTCAACAA--TGAATACATAATA--CAAGCAAGTTCTACATG 161289 | ||||| | | | | ||| | | ||| | ||| | || |||| ||| ||||| Sbjct 85193 TGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAGAGACATGCAAATTCAACATG 85252 Query 161290 TTTGTTTTCATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCAT 161349 |||||| | | || |||| ||| || | | | ||||| ||||||| || || Sbjct 85253 CACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTA-ATCCAC 85311 Query 161350 TTCTCTAGTTTTTAA-CCAGAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTA 161408 | ||||||| |||||| || || ||||| |||||| ||||||| ||||||| Sbjct 85312 GT------TTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTA 85365 Query 161409 CAATAGAGAATGCTACTAAT-TTGTG----AGCAT-ATGTCTTATCAGATTTAATCCATT 161462 | | ||||| | || | |||| | ||| || | ||||| | | ||||||| Sbjct 85366 CGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTT---ATCCATT 85422 Query 161463 TATTACACCAATCAGCTTTCTTTTTAATACTTGGCATAGTTTTAATAG-----AATTAAT 161517 | || ||| || ||||| |||||||| |||| || || ||| | ||| || Sbjct 85423 TCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAA 85482 Query 161518 GAGTTTATTTCTCAAAGCATCATCTTTAACAAATGTAGTCAACATTAG---TGAATACAT 161574 | || |||||| | ||| ||| | |||| || | |||| ||| ||||| Sbjct 85483 AATCTTTTTTCTCT-----TGTTCTCTAATATATGTT-TCTA--TTAGCAATGAGTACAT 85534 Query 161575 TTCTCCATGAGCATTTTCCATTGCATA--TTGGAAACCATAAGCACATTCAGCTTCTTTT 161632 || ||| |||||| || ||| |||||| |||||| ||||| ||||||| | Sbjct 85535 CTCAGAATGTATATTTTCTAT--CATTATTTGGAATCCATAAACACATCTAGCTTCTGGT 85592 Query 161633 ATTTTCACAACATCAATAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCTGCC 161692 || | || | | || ||||||| || ||| |||||||||| ||||| | ||| Sbjct 85593 ATCTGAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCT 85652 Query 161693 GCAAAAAATGCCAATACGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTATTC 161752 |||||||||||||| || | | ||||||| ||| |||||||| | | || |||| Sbjct 85653 GCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATT---AAGACCATTC 85709 Query 161753 CAATCATTCACATCTTTTGCCAAATCCACTTCTTCAACTGTCCAA 161797 ||||| | | ||| || | ||||| ||||||||| | |||||| Sbjct 85710 CAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAA 85754 >seq378 Length=27305 Score = 114 bits (126), Expect = 1e-19 Identities = 196/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 |||| || | |||||| ||||| | | ||||| ||||| ||| | |||||| ||| | Sbjct 14485 GATTGTCTATATCTTCGCCTCCTAGCTGTGTATTACCTGATGTACTTTTTACTTCGAATA 14544 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 ||||| | | ||||| | ||||||| ||||||||||| | |||| | | Sbjct 14545 CACCATCATTTAACTCCAAAATTGAAACATCAAATGTTCCACCACCTAAATCATACACTG 14604 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 ||| ||| | || || | || |||| |||||| || | || ||||| |||| Sbjct 14605 CGACA---ATTCCATT---TTTATCCTTGTCAACACCATATGCCAGTGCTGCAGCTGTTG 14658 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 ||||||| |||| | ||| | | ||||| | |||| | | || ||| || |||| Sbjct 14659 GTTCATTTATAACACGTGCAACCTCTATTCCAGCCACTCTTGCAGAATTTTTTGTAGCTT 14718 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| ||||| ||| | |||||||||||| || |||||||| || Sbjct 14719 GTCGTTGTGCATCATCAAAATATGCAGGTACTGTAATAACAGC 14761 >seq23 Length=115417 Score = 107 bits (118), Expect = 1e-17 Identities = 380/581 (65%), Gaps = 31/581 (5%) Strand=Plus/Plus Query 130732 AATTGCCATAGATGAAGCTCATTGTATTAGTGCATACGGATTTGATTTTAGGACTGCTTA 130791 ||||| || |||||||| |||||| | ||| || || ||||||||||| ||| ||| Sbjct 98692 AATTGTGATTGATGAAGCACATTGTGTCAGTCAATGGGGTTTTGATTTTAGACCTGATTA 98751 Query 130792 TAGAGAGATT---ACATTTT-TCAAAGAAATTTTACCCAATGTTCCAATATTAGCATTAA 130847 | | ||| | || | | | |||||| |||| | ||| || |||| |||| Sbjct 98752 TGTCCA-ATTGGCAGATAATCTTAGAGAAAT------CAATATACCAGTAATAGCTTTAA 98804 Query 130848 CTGCGACAGCAACTAATATTGTTGCCAAAGATATTTGTAAGGTTTTGCAATTAAAAACTG 130907 | || || |||| | | ||| | ||||||||| ||| | ||| ||| ||| Sbjct 98805 CAGCCACTGCAAACAGTCGTGTAGAAAAAGATATT-GTAGGATTTCTCAA----AAATCC 98859 Query 130908 ACGAACCCATTAAAGCCTCTTTCGATCGACCTAACTTATATTTAGAGGTACGAATGAAGA 130967 | || | || ||| |||| || || || || | | || ||| || |||| Sbjct 98860 AAAAATCTATAGAAGTAG-TTTCAATAGAAAAAATATAAAATATGAAGTAAGAGAAAAGA 98918 Query 130968 GTAAAAATCCTGCAAATGATATTATTCCAATTATCAATA---AATATCCAAATCAATCC- 131023 |||||| || | ||||| | || |||| ||| | ||||||||| ||| Sbjct 98919 ATAAAAACACTCTTATAAATATTGTATCATTTATAAATGCCTATTATCCAAAT---TCCA 98975 Query 131024 --GTTATTATTTATTGTTTAACCAAGAAAGAGACACAAAAAATAGCTGATATATTGACTG 131081 | ||||||||||||| ||| |||||||| || |||| | |||| |||| | Sbjct 98976 GAGGTATTATTTATTGTACAACAAAGAAAGAATGTGAAGAAATCACAGATAAATTGCAAG 99035 Query 131082 TTCATAAAGTT-GTTTGTGGTATCTATCATGCAGGTTTATCAAACGAACACAAGACAAAA 131140 | ||||| | || ||| | |||||| || |||||| || ||| | || Sbjct 99036 ATTATAAAATCAGTGCAAAATATTT-TCATGCTGGATTATCACCTAAAGACAGAAGGAAT 99094 Query 131141 ACTCATACTAATTTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGT 131200 | || | | || || ||| || | |||||| | ||||| ||||||||||||||| Sbjct 99095 ATACA-AGAAGATTGGTC--TAAAAATCTTAAAATTATTGTAGCTACAATAGCATTTGGT 99151 Query 131201 ATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATT 131260 |||||||| ||| | ||||| || |||| || ||||| ||| || | | | Sbjct 99152 ATGGGTATAGATAGAAAAGATGTACGATTTGTAATACATTATACTCTTCCAAAAAGTGTA 99211 Query 131261 GAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 ||||| ||||||||||||| ||||||||| || | ||||| Sbjct 99212 GAAGGATATTATCAAGAAAGTGGTAGAGCTGGAAGAGATGG 99252 >seq100 Length=102554 Score = 102 bits (112), Expect = 6e-16 Identities = 389/601 (65%), Gaps = 15/601 (2%) Strand=Plus/Minus Query 281303 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 281362 || |||||||||||||| || || |||||| | |||||||| || | ||||| Sbjct 6070 TTTTTATCTGCTTCTTCGTGTTTCTTGGCTTCTTCTACCATTCTCTTAACATCTTCTTCT 6011 Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 ||| |||||| | |||| || | || | || | | || |||| || ||| Sbjct 6010 GAGTGTCTTCCTCTCATATTCGTTACTGTTAGATGTTGTGTGTTACTTGTAGAAAGATCC 5951 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 ||| || || ||||| ||||| ||| ||| | ||| || | ||||| ||||| ||| Sbjct 5950 TTGGCTGTTACTTTAAGGATACCGTTGTTATCAATTTCACATTTAACTTCTATTTGTGGG 5891 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || ||||| | || |||||||| || || ||||| || || | |||||||||| Sbjct 5890 ACTCCTCTTGGTGCTGGTGGGATTCCATCTAAATTGAAACGACCTAATAAATTATTATCT 5831 Query 281543 -TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGA 281601 | |||| || ||| || || |||| || || || | |||||||||||| Sbjct 5830 CCAAATGAA-GATCTTTCTCCTTCACAAATAGAAATTGTTACGGATGGTTGATTATCTGA 5772 Query 281602 ATAAGTTGTAAATACTCTGGATTTTTTA-CAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || ||||||||| ||| | || | || || |||| || || ||| Sbjct 5771 GTAGGTAGTAAATACT-TGGGTCTTGGATGTTGGGATGGTTGAACACTTAGGGATCATAG 5713 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 || ||| || || || ||||| | | || | ||| || || | |||| || | Sbjct 5712 GTGTTGCAATTCCTCCTGCAGTTTCAATAGAAATTGTAAGTGGGGTTGCGTCAAGAAGTA 5653 Query 281721 CAATATTTTGAAGTTTTTC---ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAG 281777 ||| ||| | | | || |||||| | || | | | ||||||||| ||| | Sbjct 5652 AAATGTTTCCACGATCATCTAAATCAGTATCTCCTTCTAATAAAGCTGCTTGGTAAGCTG 5593 Query 281778 CACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA---GTTTTTTACCATTGA 281834 | || |||||| ||||||||||| | || || | || | || ||| || || Sbjct 5592 CTCCCAATGCAATTGCTTCATCAGGGTGAAGAGAGTGGTTAATCTTTTGTTTTCC---GA 5536 Query 281835 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | || ||| |||| | ||||| ||||| | ||| ||||| || |||| |||| Sbjct 5535 AGAATTCTTCTAAG-AGTTCTAAAACCTTTGGAATTCTAGAAGATCCACCTACTACTACA 5477 Query 281894 A 281894 | Sbjct 5476 A 5476 >seq256 Length=67767 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| || ||||| ||||| ||| | ||||| | ||| |||| | |||||||| Sbjct 29159 GAATTATTTTTCCATACAATGGGAGGTAGAGAAGGATTGATTGATACTTCGATTAAAACA 29218 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 |||| |||||||| |||||||||| ||||||||||| | |||||| | | | Sbjct 29219 TCTGAAACTGGTTACATTCAAAGAAGACTTGTCAAGAGTTTAGAAGATTGTTCTATTGCA 29278 Query 435253 TATGATGGTACAGTGAGAAATG 435274 |||||||||| || ||||||| Sbjct 29279 TATGATGGTAGTGTTAGAAATG 29300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740609681583372