Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq256 188 2e-42 seq56 152 1e-31 seq278 114 3e-20 seq378 100 7e-16 seq89 93.3 1e-13 >seq256 Length=67767 Score = 188 bits (208), Expect = 2e-42 Identities = 442/648 (68%), Gaps = 28/648 (4%) Strand=Plus/Plus Query 304880 AACAA--TTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC 304937 ||||| |||||||| ||| ||||| |||||||| ||||||||||| | ||| | Sbjct 27594 AACAACTTTTACAATTTCACATTGCTACATTAATAGATAATGAAATATCAGGACAGCCAC 27653 Query 304938 AGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAA 304996 |||| ||||| ||| ||||||||||| |||| || || | | ||||||||||| Sbjct 27654 AGGCTCTTCAAAAGAGTGGAAGACCTTTAAAAAGTATAAGTGCTA-GACTTAAAGGTAAA 27712 Query 304997 GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTA 305056 || || | | |||||||||| ||||| ||| | ||||||||| |||||||||||| Sbjct 27713 GAAGGAAGAGTAAGAGGTAATCTTATGGGTAAAAGGGTTGATTTTTCTGCAAGAAGTGTT 27772 Query 305057 ATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTA 305116 || |||||||||||| | ||| | ||| ||||| ||||||||||| |||||||| | Sbjct 27773 ATTACACCTGATTCTAATATTGGGCTTGATGAAGTAGGAGTTCCAGAACAAATTGCTAAA 27832 Query 305117 AAACTAACATTTCCAGAGAAAGTTAACGAG-AAAAATATTAAACATTTGAGACG--TTGT 305173 | || ||||||| || | || |||| || |||||| | ||| ||| | ||| Sbjct 27833 ATCCTTTCATTTCCTGAAAGAG-TAACTAGTTTTAATATT-GATTTTTTAGAAGAATTG- 27889 Query 305174 GTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAG 305233 ||| | || | || ||||| || || | ||| |||| | | | || Sbjct 27890 GTTAAAAGAGGTCCTTATAATTATCCTGGAGCAAATTATGTAATAAGAGAAGATGGTCAG 27949 Query 305234 AAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAGTAAAATGCTTGAAATTAAT 305293 ||| | ||||| | | || ||| | | |||| ||| ||| | | || Sbjct 27950 -AGAATAGATCTTAGGTATA-ATAGATCTGA---AATT------AAT-CTT--ACTGAAG 27995 Query 305294 GATATT--GTTATCAGACATTTGAATGACA-ATGATTGGGTTCTGTTCAATAGGCAACCA 305350 ||| || || |||||| | | | ||| ||| ||| || || || || || || Sbjct 27996 GATGTTCAGTAGAAAGACATAT-AGTTACAGGAGATATGGTACTTTTTAACAGACAGCCC 28054 Query 305351 TCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTT 305410 || ||||||||||| ||||||| | ||||| | | ||| ||| ||| || ||| Sbjct 28055 TCTTTGCATAAAATGAGTATGATGTCACATAAGGCAAGAGTTTTAAAGAAATTAACCTTT 28114 Query 305411 CGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAAT 305470 || |||||| | ||||| | | || ||||| || ||||||||||| |||||||||||| Sbjct 28115 CGTTTAAATCTTAGTGCCACTTCCCCGTATAACGCTGATTTTGATGGTGATGAAATGAAT 28174 Query 305471 ATGCATGTACCTCAATCAAAGGTTACAATGACTGAATTATCAGAAATA 305518 | ||| | || ||| || | ||||| |||||||| |||| || Sbjct 28175 TTACATATGCCACAAACATATAATACAAAAGCTGAATTACAAGAATTA 28222 >seq56 Length=107489 Score = 152 bits (168), Expect = 1e-31 Identities = 464/705 (66%), Gaps = 23/705 (3%) Strand=Plus/Plus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTT 110523 |||||| || || ||||| | ||||| | ||||| || | | | |||||| ||| | Sbjct 12414 TATTCACGCAACACCTACATTGTTTAATTCCGGAACAAA-GAATAATCAATTGAGTTCAT 12472 Query 110524 GCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAA 110583 | |||||| | | || || || |||||||| |||||||| | ||| || | ||| | Sbjct 12473 GTTTTCTTTTGGATATCAAAGAGGATTCTATAGAAGGTATATTCGATACTGTGAAAAACT 12532 Query 110584 CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAA 110643 ||||||||| ||||||| | ||||| | || ||| | ||||| || | | ||| Sbjct 12533 GTGCTCTTATATCTAAAAGTGCAGGAGGTCTAGGAATTAATATTCATAATGTGAGAGCAA 12592 Query 110644 AAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCA--ACT-GGACTTGTTCCAATG-TTA 110699 ||||| | | || || | | | |||| | ||| ||| |||| || ||| ||| Sbjct 12593 AAGGATCTACAAT---AAAATCTACAGGTGGAAGATCACTCGGAGTTGTACCTATGCTTA 12649 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCA 110756 | | || || | || |||| ||||| |||||||| || || |||| ||| || Sbjct 12650 AAACATTTGAAGCA-ACAACAAAGTATGTAAATCAAGGAGGAAAAAAGAGACCTGGTGCA 12708 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 | || | || | ||||| |||||| ||| || | |||||| |||||| | | || Sbjct 12709 ATGGCAGTATACATAGAACCATGGCATGTAGAAATCTATGAATTTTTAGAATTAAGAAAG 12768 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| ||| || ||| |||| || | |||||||||| | | | ||| | ||||| Sbjct 12769 AATGTTGGAAAAGACGAAGTAAGAACAAGAGATTTATTTTTAGGACTTTGGGTACCAGAT 12828 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 |||||||||||| | || |||||||| ||||| ||| | | | | || | Sbjct 12829 TTATTCATGAAAAGAGTCGAAGAAAATAAAGATTGGTCACTTTTTTCTGCGGATACAGCA 12888 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 |||| | ||| || | | ||||||||| | | ||||| ||| |||||||| | Sbjct 12889 CCTGATTTATGGGAGAAACACAATGAAGAGTTTGTAAAACTTTATGAAGAATATGAAGCA 12948 Query 110997 GAAGGCAAGTTTCGCA--AACAA--ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGA 111052 ||| | || ||| || || | ||||||| | |||||| | || |||| Sbjct 12949 AAAG----GATTGGCAATAAGAACTGTAAAAGCTCAACATCTTTGGAAAACGATAATTGA 13004 Query 111053 ATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATC 111112 | ||||| | ||||| || | ||||| || | ||||||||| |||| | | || Sbjct 13005 AACACAAATAGAAACAGGTAATCCTTTCATAATTTATAAAGATACGTGTAATAGATATTC 13064 Query 111113 TAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA--TTTGTGC 111155 ||| || | ||| | ||| | || || | | ||| ||||||| Sbjct 13065 TAACCAGAAAAATATTGGATCTATAAAATGTTCTAATCTTTGTGC 13109 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 112614 ATTGACAAAACGACCTATCCAATTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCA 112673 || |||| ||| | |||||| | || || | ||| | ||||| | |||||||| Sbjct 13258 ATAGACAGAACAAAATATCCAGTAGAAGAAACTAAAAAAAGTAATATGAGACATAGACCT 13317 Query 112674 ATTGGCATTGGCGTACAAGGATTAGCTGATGTATTTATGATGATGCGAATTCCTTTTGAT 112733 || || ||||| || ||||||||||| ||||||||||| || | |||| || |||||| Sbjct 13318 ATGGGTATTGGTGTTCAAGGATTAGCCGATGTATTTATTATTCTAAGAATGCCATTTGAT 13377 Query 112734 TCTGACCGTGCTAAATTCTTAAATGAAAAGATTTTCGAAACAATCTATT 112782 ||| |||| ||| |||||| | | ||||||||||| || |||| Sbjct 13378 AGTGAAGAAGCTAGATTATTAAATAAGCAAATTTTCGAAACTATTTATT 13426 >seq278 Length=64959 Score = 114 bits (126), Expect = 3e-20 Identities = 254/379 (67%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 279060 TATATGG-TATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAA 279118 ||| ||| |||| ||| | || ||||| ||| | || ||| | | | ||| | || Sbjct 10222 TATTTGGATATTGAAAAGTTAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAA 10281 Query 279119 TGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCT 279178 || ||||| || | || || |||||||| ||| ||||||| || | ||| || | Sbjct 10282 TGCTCTTTAATTTTAACAGAAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGT 10341 Query 279179 GTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGT 279238 || | || ||| | ||||| ||||||||||| | ||||||| | | |||| || Sbjct 10342 CTTGTAGGAAAAGATCATTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGA 10401 Query 279239 GATAAAA-TCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAA 279297 || |||||| |||| ||| | || |||| |||||||| || Sbjct 10402 GAAGCTTCTCACAA-ACAGA-----TTATGGAAAATAAA----------GAATTGATAAA 10445 Query 279298 TTTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACG 279357 | | ||| ||||| | |||||| | ||||||||| ||||||||||| | | |||| | Sbjct 10446 TATTAAAAAAATAATAGGATTAAAACAAGGTAAAGAATACAAAGATGTAAAAGATTTAAG 10505 Query 279358 ATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATT 279417 |||||| | ||||| ||| |||| || |||||| ||||| || || |||||||| Sbjct 10506 ATATGGGCATATTATAATTATGACGGATCAAGATCATGATGGTTCCCATATCAAAGGATT 10565 Query 279418 AATACTTAATTGGGTTGAT 279436 | |||||| ||||| Sbjct 10566 GTTGATTAATTTCTTTGAT 10584 >seq378 Length=27305 Score = 100 bits (110), Expect = 7e-16 Identities = 464/728 (64%), Gaps = 46/728 (6%) Strand=Plus/Minus Query 167223 AAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGT 167282 ||||||| || || |||||| | |||| |||||||| |||||| ||||||||| Sbjct 17460 AAATCTTCATCAACGTTCATTATAGCACCTGCATTATCAAATTCACCACAATAATTTGGA 17401 Query 167283 GCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACT 167342 || ||||| || || |||||| | ||| ||| || |||||||| ||||||||||| Sbjct 17400 GCAGAAAAGACTGTGACTAATCCTCTATTTGCAAAAAACTCATAACCTTCTTCAACAACC 17341 Query 167343 TCATGGGCACGTATTACAAGTTCAACTCCTAtttttttAAGAAAATTAGT-TAAAGCA-- 167399 | || || | || ||| |||| | ||| ||||| | || ||| | || | | Sbjct 17340 TGGTGAGCTCTGCATATAAGATCAATTTCTAATTTTTCTA-AATATTCTTCTACAATATC 17282 Query 167400 CGTAATCCAAAT-TTATAACTACAACCTCTTTCAGATTCAGAATAATAATCAATATCATG 167458 ||| |||||| || | ||| |||||| ||| ||| | ||| | | || Sbjct 17281 AGTA--CCAAATGATACAGATAC-ACCTCTATCATTTTC----TCCCCATC-CTTTGAT- 17231 Query 167459 CGATGGATCCG------CCCAAAGAAGATCGCATACCAACCCCTTATCAGGGATATCAAT 167512 ||||| || | ||| | | ||| || | || || || |||||||| | Sbjct 17230 AGATGGTTCAGGGTCACTCCATAATAAATCACAAAGTAAACCTGATTCTGGGATATCTGT 17171 Query 167513 AGGTTTTTTAATCCTATTGATATCTTCTAATTTATTAATATCTTCAGTGATTCCACCATG 167572 |||| || |||| | || || | ||||| ||| || | ||| || ||||||||||| Sbjct 17170 AGGTCTTCTAATATTTTTAATCTGTTCTATTTTCTTCAGTTCTGGAGATATTCCACCATG 17111 Query 167573 AACACAAAAAGCCAATGGATTATCAATTGTTATTCCAATGGTTGCAGCAATAGACATAGT 167632 | ||| || |||| | || |||| ||||| || | | | Sbjct 17110 CATACATAA-----------TATCCTATCTTCAACCAA----AGCAGCTATTGGTAAACA 17066 Query 167633 GTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCA---CGTCGTTTGCATTC 167689 || |||| ||| | || ||||||| | ||| |||| | || ||| ||||| Sbjct 17065 GTTAAAACAATCAGTAAATTTTTTCCATAACTTT---CCACCATATCTTCTTTTACATTC 17009 Query 167690 ATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAAAAT 167749 ||| ||||| ||||| ||| ||| ||||||||||||||| |||| ||| | || Sbjct 17008 ATCATAAAATCCATATATTCTATTTATACTAGCACATTCGTGATTACCTCGTAACATAAA 16949 Query 167750 TATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGATTT 167809 | |||||| | || ||| || | | || ||||| ||||| | Sbjct 16948 AAAATTATTTTTATATTTTATTTTATAAGCAAACAAAAGGCATATAGTTTCCAATGACTG 16889 Query 167810 AACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGATTATC 167869 ||||||||| ||||||||||| | |||| ||| ||||| || | |||| | | Sbjct 16888 TTTACCTCTATCTACATAATCACCCATGAATAAATAATTATT---CTTAGGAGGAAAACC 16832 Query 167870 TAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACCTACA-ACCT 167928 | | || ||| | | || ||||| || |||| ||||| | ||| || ||| | || Sbjct 16831 TCCATATTGAAACAACTGTAACAAATCTTTATATTGCCCATGAATATCTCC-ACATATCT 16773 Query 167929 TTATGGGA 167936 |||| ||| Sbjct 16772 TTATAGGA 16765 >seq89 Length=102635 Score = 93.3 bits (102), Expect = 1e-13 Identities = 162/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 167687 TTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAA 167746 |||||| ||||| ||||| |||||| || || ||| |||||||||||||| || Sbjct 19587 TTCATCATAAAATCCATATATTCTTGAAATTTCTCTCGTTTCATGATTTCCTCTTAACAA 19646 Query 167747 AATTATGTTATTTNNNNNNNNNNNNNTGTA-GCAAAATAA-TAACAAAATTGTTTCTAAT 167804 || || | ||| | || | |||| || ||| |||||||||| Sbjct 19647 TATAAT--TCTTTCTGGATACATTACTTTAAGTAAAAGAAGTAATGTTATTGTTTCTATA 19704 Query 167805 GATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGA 167864 || || | |||||||| ||||||||||| ||||| ||| ||||| || | || || Sbjct 19705 GAATTTTCTCCTCTATCCACATAATCACCCAAAAAAATAAATTTACTT---TCTGGTGGT 19761 Query 167865 TTATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACC 167920 | ||| | |||| |||||||| ||||||||| | |||| || || | |||||| Sbjct 19762 GTTCCTATTATTTTGAAAATATTTAATAAATCAAAATATTGGCCGTGAATATCACC 19817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186806383051542