Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq57 122 7e-23 >seq57 Length=2400 Score = 122 bits (134), Expect = 7e-23 Identities = 254/376 (68%), Gaps = 3/376 (1%) Strand=Plus/Plus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCAAAGTCAT 111622 ||| ||| | |||||| ||||||| |||||| | |||||| || | | ||| |||| Sbjct 325 AAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAGTATAAAATCAT 384 Query 111623 CAGCAACAAAATCGTCAATGCAAGCA-ACTCTTCGTTT--AATTTTTAGTTTTGGAAAGG 111679 || ||||||||| || | | | | ||| ||| || ||| | ||| || || | Sbjct 385 CAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAATTTTAGGGAATG 444 Query 111680 GGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCG 111739 | ||| ||| ||| || || || |||| |||||||| ||| | ||| Sbjct 445 GATAAGGTGTTCTTTCAAGTTGCTTTTTTATTGGCTCAATGTGATTCTCATATAAATGAA 504 Query 111740 CATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGT 111799 |||| |||| | ||||||| ||||| | || || || ||||| | | ||| | ||| Sbjct 505 CATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTTTTGCCACCATTA 564 Query 111800 ATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATC 111859 | | || || ||||||||||| ||||| || || || | |||||||| || |||| Sbjct 565 AAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCGGATC 624 Query 111860 TTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGAC 111919 ||||||||| |||| || |||||| | | |||||||||||| | | ||||| Sbjct 625 TTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAAATAAACAATGAC 684 Query 111920 AAGGAGGCAATGCCAT 111935 | || || | ||||| Sbjct 685 ATGGTGGAAGAGCCAT 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391943584174786