Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887975.1_202016-12-01] 422 sequences; 5,802,241 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq405 96.9 5e-15 seq334 95.1 2e-14 >seq405 Length=8842 Score = 96.9 bits (106), Expect = 5e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 63721 AAAATAAAATTAAGATCTTCTAAAATACCAGAAATAGGTGATAAATTTGCTTCTTTTACA 63780 ||||||||| || |||| | | |||||| ||||||| |||||||||||||| | ||| Sbjct 7738 AAAATAAAAGTACGATCATGCAGAATACCTCAAATAGGAGATAAATTTGCTTC-TCGACA 7796 Query 63781 -GCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACCAAAGA 63839 | || |||||||| || |||| | |||||||||| ||||| ||||||||||| Sbjct 7797 TGGACAGAAAGGTACCATAGGAATGACATTAAGACAAGAAGAAATGCCATTTACCAAAGA 7856 Query 63840 CGGTATCGTACCCGATCTCGTCATCAATCCACACGCTTTTCC 63881 || | |||| ||| | | || || ||||| || ||||| Sbjct 7857 AGGATTGATACCAGATGTGATTATGAACCCACATGCATTTCC 7898 >seq334 Length=56028 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 155895 TCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCG 155954 ||||| ||||| || ||| || | ||||| || | ||||||||||||||||| Sbjct 18986 TCATCTGGTAAAGGAACTTCAATGTGTAATTCAAATCTTCCAGGTCTTAATAATGCGCTA 19045 Query 155955 TCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACA 156014 || || || || ||| |||||||| ||||| | | || || ||||| ||||||||| Sbjct 19046 TCTATCAAATCCAATCTATTGGTCATTCCTATTACAAGTATATTATTTAATGATTCTACA 19105 Query 156015 CCGTCTATTTTAGACAATAATTGATTGACTAC 156046 || || ||||| | | ||||||||| ||||| Sbjct 19106 CCATCCATTTTTGTAAGTAATTGATTTACTAC 19137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667071681178320