Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq257 282 4e-71 >seq257 Length=62978 Score = 282 bits (312), Expect = 4e-71 Identities = 607/897 (68%), Gaps = 28/897 (3%) Strand=Plus/Plus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 ||| ||||| || || | |||||| ||||| || |||||||| | |||||||||||| Sbjct 55719 TCTCTGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATT 55778 Query 15970 TTCCATAAAATCAAAGGGATT---AGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGT 16026 |||||| |||||||| ||||| ||| | || ||| | |||||| | || || || Sbjct 55779 TTCCATGAAATCAAATGGATTTTCAGT-GTTG-TAATGT-TTAGAGAATCCTAGATC--- 55832 Query 16027 AACTAA---TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCC 16083 |||||| | || || ||||||||||| || | |||||| | | || || ||||| Sbjct 55833 AACTAAGAGATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCC 55892 Query 16084 TATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTT 16143 || | | ||| || ||| || | | ||||| |||||| || | || |||||||| Sbjct 55893 AATTAAACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTT 55952 Query 16144 AATGATATCGGTGGCTCGTGTTTCAGACGGTG---TATGGTTTAGGTG----TTTAAACA 16196 || || ||| | | ||||||| | |||| | | | || ||| ||||| Sbjct 55953 AACTATTTCGAT---TACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAA--- 56006 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 ||||| || || || ||| | |||||| ||||| ||||| | ||| ||||| |||| Sbjct 56007 -GAGACATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAG 56065 Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAA 16316 | | ||||||||| ||| ||||| || | ||||||||| | ||||| || || || | Sbjct 56066 TAAGACCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGA 56125 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 |||| ||||| || || | ||||| || |||| || | || | | | ||||| Sbjct 56126 AGAAAATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTAT 56185 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 ||||||||| ||| || ||||| | ||| || || || || | Sbjct 56186 CCGTTATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTG 56245 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | ||||| || ||||||| || || | ||||| || || || || || || Sbjct 56246 CGTTAAATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGT 56305 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 |||| || || ||||| || ||||| ||| || |||||||| | |||| ||| || | Sbjct 56306 ACATCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTG 56365 Query 16557 CTATTTGTACTTCCAC-GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 ||| || |||||| | | ||||| ||| || || ||||| || || || || | Sbjct 56366 GTATCTGAACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGAT 56424 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || |||||||| ||||| | | | || |||| | |||| ||| ||||| || | Sbjct 56425 GCTGCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTC 56484 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 ||||| | |||||| || |||| ||| |||||||| | |||||||| | | |||| Sbjct 56485 CAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCC 56544 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTATCT 16792 | ||||| | | ||| ||| || ||||| ||| ||||| | || |||||||| Sbjct 56545 TGCTTATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCT 56601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411593613480