Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq58 156 3e-33 >seq58 Length=2400 Score = 156 bits (172), Expect = 3e-33 Identities = 391/584 (67%), Gaps = 9/584 (2%) Strand=Plus/Plus Query 101524 TTATTTTTCTTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAA 101583 ||| || | |||||||||||||| |||||| || | || || | ||| ||||||| Sbjct 314 TTAATTGTTTTAAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAG 373 Query 101584 TATAATGTCATCTGCTTTAAAGTCATCAATGCA-TGAAACATTTC--TAGCAAATCTAAG 101640 ||||| ||||| || ||| || | || | | | |||| | |||| ||| Sbjct 374 TATAAAATCATCAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAAT 433 Query 101641 TGTTGGAAACGGTCTAGGAGTTCGCGTCAACT-GCATTTTAAGAGCATCAATGTGATCTA 101699 | | || || || ||| |||| |||| | || |||| | | |||||||||| Sbjct 434 TTTAGGGAATGGATAAGGTGTTCTT-TCAAGTTGCTTTTTTATTGGCTCAATGTGATTCT 492 Query 101700 CATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACAT 101759 |||| | ||| |||| |||| || ||||||||| || || || ||| ||| || | Sbjct 493 CATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTT 552 Query 101760 GAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCA 101819 || | ||| ||| | ||| ||||| |||||||| ||||| || ||||| || |||| Sbjct 553 TTGCCACCATTAAAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCA 612 Query 101820 TATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGAC 101879 ||||| | ||||||||||| | |||| | || |||| ||||||||||||| Sbjct 613 TATCACCGGATCTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAA 672 Query 101880 TTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC-ACAC 101938 ||| |||||| || || | |||||| | | | | |||||| || ||| Sbjct 673 ATAAACAATGACATGGTGGAAGAGCCATTTCCCGTAATTGTTCGGGATTCCATGCGACA- 731 Query 101939 ATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGG 101998 || | ||| |||||| || || | | | || ||| |||| ||| | || ||| || Sbjct 732 ATAACCATTCTTCTACTGGTTGGATCTTTCTTAATAATATCTATCGCATTTTGTAACTGA 791 Query 101999 TCAACTCCTTCTCCTTTATAATCGCGCCCAACACCT-TTATATTCTGCTCCGAAATGCCT 102057 | ||| |||| |||| | ||||| | ||| | |||| || |||||| | Sbjct 792 TTAACACCTTTTCCTGTGTAATC-AGTTTTACAATTAACATATGGAGCATTGAAATGGTT 850 Query 102058 CCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGT 102101 ||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct 851 CCATTGAAAACCATATACAGGACCTAGATCATCTTCTTCTCTGT 894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249267193189