Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq58 145 5e-30 >seq58 Length=2400 Score = 145 bits (160), Expect = 5e-30 Identities = 377/570 (66%), Gaps = 5/570 (1%) Strand=Plus/Plus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| ||||||||| | || | | | ||| ||||| || |||| ||| Sbjct 324 TAAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAGTATAAAATCA 383 Query 96958 TTTGCTTTAAAATCATCAATA--GATGCAATCTTTCTGGCAAACTTTAGTGTT-GGGAAA 97014 | || |||||| | ||| | | | | || || || |||| | || ||||| Sbjct 384 TCAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAATTTTAGGGAAT 443 Query 97015 GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGA 97074 || || |||| ||| |||| | | | | |||||||||||| |||| | ||| Sbjct 444 GGATAAGGTGTTCTTTCAAGTTGCTTTTTTATTGGCTCAATGTGATTCTCATATAAATGA 503 Query 97075 GCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATA 97134 |||| ||||||| || |||||||| || || |||| |||| || | || | ||| Sbjct 504 ACATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTTTTGCCACCATT 563 Query 97135 CAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGAT 97194 ||| | || ||||| |||||||| |||||||| || || | |||||||||| | ||| Sbjct 564 AAAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCGGAT 623 Query 97195 CTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGA 97254 ||||||||||| |||| | || |||| |||||||| ||| || |||| Sbjct 624 CTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAAATAAACAATGA 683 Query 97255 CAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGC-ACACATCAACATTCT 97313 || || || | ||||||| | | | | | |||||| || ||| || | |||||| Sbjct 684 CATGGTGGAAGAGCCATTTCCCGTAATTGTTCGGGATTCCATGCGACA-ATAACCATTCT 742 Query 97314 TCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTC 97373 |||| |||||| | | | | || ||| || | | ||| |||| ||| |||| Sbjct 743 TCTACTGGTTGGATCTTTCTTAATAATATCTATCGCATTTTGTAACTGATTAACACCTTT 802 Query 97374 TCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCC 97433 ||| |||| ||| | |||| || ||||| ||||||| || || Sbjct 803 TCCTGTGTAATCAGTTTTACAATTAACATATGGAGCATTGAAATGGTTCCATTGAAAACC 862 Query 97434 ATAAACAGGTCCAAGGTCTCCTTCTTCTCT 97463 ||| ||||| || || || |||||||||| Sbjct 863 ATATACAGGACCTAGATCATCTTCTTCTCT 892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346782144597230