Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq58 178 2e-39 seq301 152 8e-32 seq235 125 1e-23 >seq58 Length=2400 Score = 178 bits (196), Expect = 2e-39 Identities = 441/659 (67%), Gaps = 23/659 (3%) Strand=Plus/Plus Query 205318 Ctttttatttttaatttt-GGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCC 205376 ||||||| ||||||||| || ||||| | ||||| | ||| | ||| ||||||| | Sbjct 419 CTTTTTAAATTTAATTTTAGGGAATGGATAAGGTGTTCTTTCAAGTTGCTTTTTTATTGG 478 Query 205377 ATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTT 205436 | ||| ||||| |||||| ||| ||| ||| | | ||| ||||||||| ||||| Sbjct 479 CTCAATGTGATTCTCATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTC 538 Query 205437 TAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTA-TAACTAGCAACATTAAATG 205495 ||| ||| | | ||| | ||| ||| ||| || | |||||||||| |||||| | Sbjct 539 TAATCCAGTAACTTTTGCCACCATTAAAG-CAAGAAGTGAATAACTAGCAATATTAAAAG 597 Query 205496 GTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTAT 205555 |||| || || ||||||||| | ||||||||||| | |||| | | ||||||||| Sbjct 598 GTACTCCCAATCCCATATCACCGGATCTTTGATATAAAAGACAACTTA---ATTTATTAT 654 Query 205556 TAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTA 205615 | |||| |||||| | ||||||||||| ||||| | | |||| | | | | Sbjct 655 CAGCGACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCATTTCCCGTAATTGTT 714 Query 205616 TAGGATTCCAGGCTGTTAAT-ATTATATTTCTA--GATTCAGGtttattttttattttat 205672 |||||||| || | ||| | || ||||| | || || | || || || ||| Sbjct 715 CGGGATTCCATGC-GACAATAACCATTCTTCTACTGGTT--GGATCTTTCTTAATAATAT 771 Query 205673 ttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATAT 205732 ||| || | ||| |||| || |||| ||| |||| || | || || || Sbjct 772 CTATCGCATTTTGTAACTGATTAACACCTTTTCCTGTGTAATCAGTTTTACAATTAACAT 831 Query 205733 ATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTC 205792 || |||| ||||| ||||||||||||||| || ||||||| |||| |||||| || Sbjct 832 ATGGAGCATTGAAATGGTTCCATTGAAAACCATATACAGGACCTAGATCATCTTCTTCTC 891 Query 205793 TAT---CATTAAAACCACGtttttttat-atattttaatgatccattttcatcccaaata 205848 | | |||| | ||||| || | ||| | || | |||| || ||||||| Sbjct 892 TGTTGATATTATA-------TTTTTCATAAAATTCTTTTGTTGAATTTCCAGTCCAAATA 944 Query 205849 tggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAAT 205908 | || ||| | ||||| || || ||| ||| ||| ||||| |||| | | Sbjct 945 TTTATCTTTTTTTGTTTTAAAAGTTTATTATCCGTTTTTCCTTTAATAAAAAATAAAAGT 1004 Query 205909 TCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATC 205967 ||||| | ||| |||| | | | | ||||||||| || | || || | || ||| Sbjct 1005 TCTTCCAAAATAACTCTATATGCCGTAGTTTTTGTTGTTAAAAGAGGTAAAGTATAATC 1063 >seq301 Length=55955 Score = 152 bits (168), Expect = 8e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || ||||| ||||| || ||| | || | ||| | Sbjct 35169 ATGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCT 35110 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| |||| || || || ||||||||||| ||||| || |||||| Sbjct 35109 GATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAA 35050 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || |||||||||||||| | |||||| || |||||||| ||||||||| Sbjct 35049 CAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAAT 34990 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || || ||||| || |||||||| || ||| | ||| ||||||||| | ||||| Sbjct 34989 ATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGGTGGTAATTAAAAT 34933 >seq235 Length=65598 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||||| |||||| | || || || || ||||| || || || |||| | ||| | | Sbjct 33127 CAATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCA 33186 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || | || ||| | ||| ||||| ||||| || ||||| ||||| || |||| Sbjct 33187 CCGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATC 33246 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | || |||||||| |||||||| || ||| || ||||||| ||||| | Sbjct 33247 AACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACA 33306 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||| || |||||||| || | ||||||||| Sbjct 33307 ATATCCAGAAAGAATCTACACTTCATTTGGTT 33338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451854435200