Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq301 138 2e-27 seq235 109 8e-19 >seq301 Length=55955 Score = 138 bits (152), Expect = 2e-27 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| ||||| || |||||||| || |||||||||||| Sbjct 34943 CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTT 35002 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || | |||||||| ||||| |||||||| || ||||| ||||| Sbjct 35003 AATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGT 35062 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||||||||| || |||||| ||| |||||||| Sbjct 35063 ATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACT 35122 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || |||||||| ||||| | ||||||| || || ||||| Sbjct 35123 TCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 35169 >seq235 Length=65598 Score = 109 bits (120), Expect = 8e-19 Identities = 185/273 (68%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || || | ||| | |||||||| | ||||||||||| ||||| ||||| Sbjct 33357 TTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCAC 33298 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | ||| || |||||||| || ||||| ||||||||||| ||||| |||| Sbjct 33297 TCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAG 33238 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| || ||||| | || | ||| | Sbjct 33237 GTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGA 33178 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAA 146288 |||||||||||||||| || || || | ||||| | ||||| |||||| | ||| Sbjct 33177 CTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATTGGGGT--AAA 33120 Query 146289 AATATTTGTTaaaaaaaaTAATTACTATTCTTT 146321 ||| ||||| |||||||||| || |||| ||| Sbjct 33119 AAT-TTTGT--AAAAAAATAAATATTATTTTTT 33090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743522319898880