Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq257 320 2e-82 >seq257 Length=62978 Score = 320 bits (354), Expect = 2e-82 Identities = 616/901 (68%), Gaps = 22/901 (2%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||||| |||||||||||||| |||||||||| ||| || ||||||||||| |||||||| Sbjct 55735 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 55794 Query 16019 GGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACA 16078 ||||||| | || | |||| | |||| | || | || | | || |||||| Sbjct 55795 GGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCCACA 55854 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCT 16138 |||||||| || | ||| | | |||||||||||| ||||| | || || | | Sbjct 55855 AATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGACTT 55914 Query 16139 TCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTA 16198 || | | ||| | || ||| || || ||||| | | ||| || ||||| | Sbjct 55915 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTACTGTTTCA 55974 Query 16199 TTTAACGGAGGGTTTAAT---AAGTGTTTAAACATT----ATACAAGCAAAATCACAATG 16251 | | || | ||| | ||||| | |||| | ||| ||||| ||| ||| Sbjct 55975 TAT---GGTGCTTTTTCTTCTAAGTG----AGCATTTAAGAGACATGCAAATTCAACATG 56027 Query 16252 CAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCG 16311 || |||||| || ||||| ||||| || || || || |||||||||||||||| ||| || Sbjct 56028 CACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCACG 56087 Query 16312 TTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGC 16371 |||||||| ||| ||||| | ||||| || ||||| ||||| |||||||| || || Sbjct 56088 TTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTACGCACGC 56147 Query 16372 AAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagccca 16431 |||||||| | || | | | | |||||| ||||||||| ||| ||| Sbjct 56148 AAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATAGTCCA 56207 Query 16432 atttgctttttgtttAACACAGTTCATGTTCTCTA--TTGCATTAAATAAATAAt-tttt 16488 | |||||| | ||||| ||| | || | | |||| ||||||||| ||| |||| Sbjct 56208 GTCTGCTTTATTTTTAATT--GTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTT 56265 Query 16489 ttCT-TTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||| ||| | ||||| |||| || |||||||| || ||||| || ||||| |||| Sbjct 56266 TTCTCTTGTTCTCTAATATAT--GTTTCTATTAGCAATGAGTACATCTCAGAATGTATAT 56323 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 | || || ||| || || ||||||| ||||||||||| | ||| || ||||| | Sbjct 56324 TTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCGCTG 56383 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 ||| ||||| | ||||| ||||| || ||||| ||||||||||| || | | Sbjct 56384 CAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCAACA 56443 Query 16668 TGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTG 16727 | | ||||||| | |||| | ||| ||| ||| || ||||| || | Sbjct 56444 CATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCATTAG 56503 Query 16728 ATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATA 16787 ||||||| || ||||| |||||||||| || | || |||| ||||| | | ||||| Sbjct 56504 ATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATATAAATCCCATA 56563 Query 16788 TGTCTTCGTAAACAATAGGAAACACAACATACTTATTTAATGTTGGTTTTAAAATAGGTT 16847 | ||||| || ||||||| |||| | ||| | |||||| | || | |||| Sbjct 56564 TACGATCGTATTTTATTGGAAACAAAACAAATCTATCTTCAGTTGGTGTCAATAGTGGTT 56623 Query 16848 C 16848 | Sbjct 56624 C 56624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509461965400