Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq257 271 7e-68 >seq257 Length=62978 Score = 271 bits (300), Expect = 7e-68 Identities = 593/873 (68%), Gaps = 20/873 (2%) Strand=Plus/Plus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 ||||||||||||||||| || ||||| |||| | |||||||||||||| ||||||||| Sbjct 55735 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 55794 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 |||||| | | | |||| | ||||| || | || | | || || | Sbjct 55795 GGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCCACA 55854 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 || || || || | | |||| | | ||| ||||| || |||| |||| || | | Sbjct 55855 AATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGACTT 55914 Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG-TAATAATTTC 14166 | | | |||||||| ||| || | || || || || | || ||| | | |||| Sbjct 55915 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATT-TCGATTACTGTTTC 55973 Query 14167 ATTAGAAGGAGGATATT-TTAGATGTTTAAAAATTAA---ACACGCAAAATCACAATGAA 14222 || | || | | || || | || | | |||| ||| ||||| ||| ||| | Sbjct 55974 AT---ATGGTGCTTTTTCTTCTAAGTG-AGCATTTAAGAGACATGCAAATTCAACATGCA 56029 Query 14223 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 14282 || ||||||||||| || | ||| || || || || | |||||||| ||||| |||| Sbjct 56030 CTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCACGTT 56089 Query 14283 tttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCA-GCA 14341 |||| | ||| ||||| | || || ||||| || ||||| || || || || ||| ||| Sbjct 56090 TTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTAC-GCACGCA 56148 Query 14342 AACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCAT 14401 || || |||| || | |||| ||| |||||| | || ||||||||| ||| ||| Sbjct 56149 AATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATAGTCCAG 56208 Query 14402 TCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT---AAATGTTCCTTC 14458 || | ||| |||||||| ||||| ||| || |||||| |||| || ||| Sbjct 56209 TCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTTTTC 56268 Query 14459 TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTT 14518 |||| || | | ||| ||||| || || || || ||||| ||||| ||||| ||| Sbjct 56269 TCTT--GTTC-TCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGAATGTATATTT 56325 Query 14519 TCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG-AGTA 14577 || || ||| || || ||||||| |||||||||||||| || || || | | | Sbjct 56326 TCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCGCTGCA 56385 Query 14578 AAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATAT 14637 |||| |||| | |||||||||||| || ||||| ||||||||||||||||| | Sbjct 56386 AAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCAACAC 56444 Query 14638 GTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGA 14697 | | ||||| | | || |||| | || ||||||||| ||||||| ||||| Sbjct 56445 ATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCATTAGA 56504 Query 14698 AAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATAT 14757 | ||||||||| ||| | |||||||| | || || | ||||| | ||||||| Sbjct 56505 TAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATATAAATCCCATAT 56564 Query 14758 TTCTTTATATAATATAGGAAAAACTACAAATCT 14790 | ||| ||| ||||| | |||||||| Sbjct 56565 ACGATCGTATTTTATTGGAAACAAAACAAATCT 56597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342953128520