Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq257 129 5e-25 seq235 113 4e-20 >seq257 Length=62978 Score = 129 bits (142), Expect = 5e-25 Identities = 356/543 (66%), Gaps = 12/543 (2%) Strand=Plus/Minus Query 57536 TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||||||| ||||||| || |||| || ||| | | || || ||||| Sbjct 56598 TAGATTTGTTTTGTTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCAGGCACT 56539 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 ||||||||||||| | ||||||||||| | ||||| ||| | ||||||| || Sbjct 56538 TTCATCGTTTTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGG 56479 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 || || || ||| ||| ||||||| | | |||||||| ||||| || ||||| || Sbjct 56478 TCTTAATGATGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGA 56419 Query 57716 TGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGC 57775 ||| |||||||| || ||| | | |||| ||| || ||||| || | | || || Sbjct 56418 TGGGATTGTTAATGAAAATCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATACCAGAAGC 56359 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 ||||| |||| ||||| ||| | || ||||| | ||||| || ||||| || | Sbjct 56358 TAGATGTGTTTATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATT 56299 Query 57836 ACTCATCGATACGTACGTGA-AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCG 57894 || || || || || | | || |||| || | ||| | | || ||||| || Sbjct 56298 GCTAATAGAAACATATATTAGAGAACAA-GAGAAAAAAGATTTTTTATTTAACGCAATTT 56240 Query 57895 AAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAA-----AAAG 57949 ||||| || | || || || ||||| ||| | || |||||||||| ||| Sbjct 56239 CTACAATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAA 56180 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 || | || || || |||| || || || ||| |||||||| ||||| Sbjct 56179 AATCATG-----TTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTT 56125 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 || || ||||| | ||||| ||| | || ||||| || | ||||| || || || Sbjct 56124 CTCTGGATCTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTAC 56065 Query 58070 GTT 58072 || Sbjct 56064 TTT 56062 >seq235 Length=65598 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || ||||| || ||||| | || || ||| | || Sbjct 33129 ATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCACC 33188 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | |||| |||||| | |||| ||||||||||| | || || || || Sbjct 33189 GACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCAA 33248 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | ||||| || || ||||| |||||||| || || |||| ||||| || Sbjct 33249 CAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAAT 33308 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || |||||| |||| |||||| ||||||| || Sbjct 33309 ATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGG 33355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763953856880