Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq257 298 7e-76 seq46 241 2e-58 >seq257 Length=62978 Score = 298 bits (330), Expect = 7e-76 Identities = 615/900 (68%), Gaps = 25/900 (3%) Strand=Plus/Plus Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 |||||||| | || | |||||| || ||||| |||||||||| || |||||||||||| Sbjct 55723 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55782 Query 33354 ATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAAT 33413 ||||||||||| ||||| | |||||| ||| ||||| | ||| | | Sbjct 55783 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55842 Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473 | || || || |||||||| || | ||| || ||| |||||||| || | | Sbjct 55843 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55902 Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533 || || ||| ||| || ||||||||||||||| | ||| || | | ||| | || | Sbjct 55903 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCT-TTA-ACTATTT 55960 Query 33534 CTA--ACGGTTTCTTCACTCGGTGGATGTAATAAATG----TTTAAACATCAAACATGCG 33587 | | || ||||| | | | | | ||| || ||||| | |||||| Sbjct 55961 CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCA 56016 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || || |||| || || |||||||| |||||||| || || || || || || ||| Sbjct 56017 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 56076 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 |||| ||||| ||||||||||| |||||||| || || ||||| || ||||| || ||| Sbjct 56077 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 56136 Query 33708 TCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCA 33763 ||||| ||| ||||| ||||| | ||| || ||| | | | || |||||| Sbjct 56137 TCTAC-GCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCA 56195 Query 33764 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || || ||| || || || ||||| | || || || || || ||||| | Sbjct 56196 TTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAA 56255 Query 33824 ATAGt-ttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 33880 | | | ||||||| | | ||| ||| ||| || || || | || || || ||| || Sbjct 56256 AAAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CATCTC 56312 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 ||||| || ||||| || || || ||||| || | ||||||||| || | ||||| Sbjct 56313 AGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTG 56372 Query 33941 CACTTCTG-TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 ||||| | | |||||| |||| | ||||||||| || || ||||| ||||||| Sbjct 56373 AACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAA 56431 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 34059 |||| ||||| |||| ||||||||| | |||| || | || ||||||||| | Sbjct 56432 AAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGT 56491 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 | ||| ||||||| ||| |||||||| | |||||||| |||| ||||| |||| Sbjct 56492 CTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTAT 56551 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 34179 | | || ||| || || |||| ||||| || | ||||||||||| | | |||||| Sbjct 56552 ATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTTCAGTTGGTG 56611 >seq46 Length=107489 Score = 241 bits (266), Expect = 2e-58 Identities = 971/1510 (64%), Gaps = 30/1510 (2%) Strand=Plus/Minus Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 || || ||||| || ||||||| || ||| | || |||||||| || | ||| Sbjct 13730 TTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATATTTGAAGTTAAAGGT 13671 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | | |||||| ||||||||||| | || ||||| || |||||| || || Sbjct 13670 TCTATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGCAACA 13611 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAA 62561 ||||| |||||||| || | || ||||||| ||| | | | ||||||| | Sbjct 13610 AATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATCTAAT 13551 Query 62562 AGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGAT 62621 | ||| | || | | |||| | ||| | ||| ||| Sbjct 13550 AAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAATAGACCCTGACTCAATGGAGAT 13491 Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 || ||||||| || || | || | | || |||| || | ||| | || |||||| Sbjct 13490 CCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTACTTGATTCCAATGCA 13431 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTATCAAA 62740 |||||||| ||||| || || | |||||||| || | | ||||| |||||||| Sbjct 13430 GAATAATAAATAGTTTCGAAAATTTGCTTATTTA-ATAATCTAGCTTCTTCACTATCAAA 13372 Query 62741 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCT 62800 ||| ||| | |||||| | || ||||||||||||||||||||||| |||||||| Sbjct 13371 TGGCATTCTTAGAATAATAAATACATCGGCTAATCCTTGAACACCAATACCCATAGGTCT 13312 Query 62801 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62860 ||||||| ||||| ||| || |||| | ||||| | | | ||||| | | Sbjct 13311 ATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGATATTTTGTTCTGTCTATTACCCT 13252 Query 62861 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCC 62920 || | |||| | |||| ||||| || | || || ||||| | ||||||||| Sbjct 13251 ATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTAGTTTTATGAAATCAAATTTGTT 13192 Query 62921 ATCTATTACAAACATGTTCAATG--CAACAGATGCCAGATTACACACGGCTACCTCATTA 62978 |||| ||| | | ||| | | | | ||||| | |||||| || |||| |||| | Sbjct 13191 ATCT-TTA-ATGAAAGTTGGAAGACCTATTGATGCTAAATTACAAACAGCTATTTCATCA 13134 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | | | || | ||| || | ||||||||| ||| || |||| ||| | |||| Sbjct 13133 GGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAGAACATTTTATAGATCCAATATTT 13074 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 | || ||| | | | ||||||| ||| ||||||| ||||| ||| |||| ||||| Sbjct 13073 TTCTGGTTAGAATATCTATTACACGTATCTTTATAAATTATGAAAGGATTACCTGTTTCT 13014 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT-TTGTATCT 63157 || || | ||| || |||| |||||| | | |||| |||| | | ||| | Sbjct 13013 ATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGCTTTTACAGTTCTTATTGCCAAT 12954 Query 63158 CCTTTCTCT-----TTCGT-ATAGAG-TATACAATCGTTCGAACTCGTCTCCCCAAACAT 63210 ||||| || ||| | ||| || | ||||| | | | || || || ||| Sbjct 12953 CCTTTTGCTTCATATTCTTCATAAAGTTTTACAAACTCTTCATTGTGTTTCTCC---CAT 12897 Query 63211 TGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 63270 |||| ||| | ||||| | | | | ||||| ||| | || | |||| Sbjct 12896 ----AAATC-AGGTGCTGTATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTTCGACTC 12842 Query 63271 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCT 63330 |||||| || | ||| || | |||||| ||| ||||| |||||||||||| ||| | Sbjct 12841 TTTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGT 12782 Query 63331 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCC 63389 | ||||| ||||||| | | || | || |||| || || |||||| ||||| Sbjct 12781 CTTTTCCAACATTCTTTCTTAATTCTA-AAAATTCATAGATTTCTACATGCCATGGTTCT 12723 Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63449 | ||||| ||||| | ||||| | || |||||||| |||| || || | | || Sbjct 12722 ATGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGT- 12664 Query 63450 TTATTATAAACTCTCAA-CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA- 63507 | || || | | || ||| || | || ||| |||| | ||| ||| | Sbjct 12663 TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGTGATCTTCCACCTGTAGATTTTAT 12604 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 | ||| ||| | || | | |||| ||| | |||| || ||||| |||||| Sbjct 12603 TGTAG-ATCCTTTTGCTCTCACATTATGAATATTAATTCCTAGACCTCCTGCACTTTTAG 12545 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 | || | || || ||| | || || | || |||||||| ||| || | || | Sbjct 12544 ATATAAGAGCACAGTTTTTCACAGTATCGAATATACCTTCTATAGAATCCTCTTTGATAT 12485 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 | |||||||| | || ||| | | | ||||| | |||||| || ||||| | Sbjct 12484 CCAAAAGAAAACATGAACTCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTAGGTG 12425 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 ||||| |||| |||||| ||| | || ||| ||||||| | || ||||| | Sbjct 12424 TTGCGTGAATAAAATATTTTTTAGACATTAAATTATACGTCTGTAACGCATCATCTATTT 12365 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA-ACAATT 63806 | | ||||||| ||| || |||||||| || | | ||| ||||||||| || | | Sbjct 12364 CTTCATCATGAATTTCTAAGGCTACACGCATAAAAACATCCTGTGGTCTTTCATACCA-T 12306 Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || || |||| ||||| || ||| ||| ||||||||| | |||||||| || | Sbjct 12305 AAATTTTTATTTTTTAACAAATACGATCTTTGCAAAGTTTTCACCCCAAAATAATTTAAA 12246 Query 63867 GAAAAGTCTC 63876 | ||| |||| Sbjct 12245 GTAAAATCTC 12236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814143875920