Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq46 444 5e-120 seq257 230 2e-55 >seq46 Length=107489 Score = 444 bits (492), Expect = 5e-120 Identities = 1224/1858 (66%), Gaps = 37/1858 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| ||||| |||| | | | | || || || | ||||||||||||||| Sbjct 14075 TCTACTGTAAATTTAATAGCCTGCATTACTGGCTTGGTCCTAAGATAATACATTCCAGTC 14016 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| | | ||| |||||||||||||| || || | || ||||| || || Sbjct 14015 TTTAATTGTTTTTTGTGTCCATAAAAATGCATACTAGTAAGCTGTGAATATGTGGGTGTA 13956 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||||| | || | | ||||| |||||| | | | | ||| || || || | Sbjct 13955 GCTATAAAAATATTAAGAGATTGTGATTGATCAACATATGGTGTTCTATCAGCAGCTAAA 13896 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 ||||||||| |||| || ||||| | ||| |||| | | ||| || | | | Sbjct 13895 TCTAAAATAGATTTCATTTTTAATTCCCATGCTGTTCTATACAAATATTTAATTTCTTTT 13836 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| | |||| || ||| |||||||||| | || | | || ||||| || Sbjct 13835 GGTATAGCTTCTATATCTTGGATAGAACCATCGTTCTGAACTACTAGGTTTTTTATTTCT 13776 Query 37087 TTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAA 37146 |||||||| | ||| ||| || ||| | | || | | ||||||||| |||||| Sbjct 13775 TTATTCCAGAGATTAAGTTTTAGTAAATCTTTAATTAAATAAGAATTTACAACTTGAAAA 13716 Query 37147 TCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTA 37206 ||||||| ||| |||||| ||||| ||||| ||| | ||||| || | |||||| Sbjct 13715 TCTCCAGCTAAAGTTCTTCTGGTATAAATATTTGAAGTTAAAGGTTCTATACATTCATTA 13656 Query 37207 TTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTC 37266 || || ||||| ||||||||||| |||||||| || | | | |||||| Sbjct 13655 AAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGCAACAAATAATGAATTTCTA 13596 Query 37267 AATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTC 37326 | |||||| | || ||| | | | | | || |||||| |||||||||||||| | Sbjct 13595 ACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTG 13536 Query 37327 TTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCA 37386 || |||||||| | |||| | ||| | |||| |||||| | | |||||| || Sbjct 13535 GTTTTATACATATCAAAATGTAATAGACCCTGACTCAATGGAGATCCCTCATATGTTTCG 13476 Query 37387 TAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTT 37446 |||| || || || |||| ||| ||| ||||| | ||| | |||||| || ||| Sbjct 13475 TAAGTACCATACCGTTCTGCTAATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTT 13416 Query 37447 TCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT-GCATAGCCCAATAA 37505 ||||||||||| ||||||||| | | |||||||| ||||| ||| |||| | | || Sbjct 13415 TCGAAAATTTGCTTATTTAATAATCTAGCTTCTTCACTATCAAATGGCAT--TCTTAGAA 13358 Query 37506 T-ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 | ||||| ||||| || || || |||||||| ||||| || ||||||||| || ||||| Sbjct 13357 TAATAAATACATCGGCTAATCCTTGAACACCAATACCCATAGGTCTATGTCTCATATTAC 13298 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 | | | |||| |||||||| | | | ||||||| ||| | |||||| | Sbjct 13297 TTTTTTTAGTTTCTTCTACTGGATATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTA 13238 Query 37625 CTAGTA-TTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAA-CAAA 37682 | || | |||| || | || | | || ||| |||| ||||| |||| ||| Sbjct 13237 CAAGAACTTTTACTATCTCTT-TTAGTTTTATGAAATCAAATTTGTTATCTTTAATGAAA 13179 Query 37683 TTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTG 37742 || || || ||| ||| |||||| ||||| | |||||| ||| | | || Sbjct 13178 GTTGGAAGAC-CTATTGATGCTAAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTC 13120 Query 37743 TATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTT 37802 | || |||| ||| |||||| || | || | ||| | ||| | || || || | Sbjct 13119 AACTATTTCTGCACAAAGATTAGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATA 13060 Query 37803 TTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGAT 37862 | ||||||| | ||||||||| | ||| | || | ||| ||||||||| | || || Sbjct 13059 TCTATTACACGTATCTTTATAAATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAAT 13000 Query 37863 AATAGATTTCCATAAACTTCTTGCTTTAAC-GATCGCTTTAAtttttttC--TTTGTTTC 37919 || | |||||| | | | ||||| || | || ||| | || |||| ||| Sbjct 12999 TATCGTTTTCCAAAGATGTTGAGCTTTTACAGTTC---TTATTGCCAATCCTTTTGCTTC 12943 Query 37920 GTATTCTATATATAATTTGTTAAAATC---------ATTCCCCCATACATCGCATAATCC 37970 |||||| ||| | ||| ||| || ||| |||||| ||| | | Sbjct 12942 ATATTCTTCATAAAGTTTTACAAACTCTTCATTGTGTTTCTCCCATAAATC---AGGTGC 12886 Query 37971 TGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAA 38030 || || |||| || | | || ||||| |||| || || ||| || | || ||| || Sbjct 12885 TG--TATCCGCA--GAAAAA--AGTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAA 12832 Query 38031 TAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTAC 38090 |||||| |||||||| | | | |||||||||| | ||||| ||| || || || || Sbjct 12831 TAAATCTGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAAC 12772 Query 38091 ATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 |||||||||||| || ||| || | || || | |||||||||||||| || | | Sbjct 12771 ATTCTTTCTTAATTCTAAAAATTCATAGATTTCTACATGCCATGGTTCTATGTATACTGC 12712 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 |||||| || ||||| || | ||||| ||||| | ||| | ||| | | || | Sbjct 12711 CATTGCACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGTTGCTTCAAATGT 12652 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 | | | ||||||||| | || ||| | || | || ||| || || || Sbjct 12651 TTTAAGCATAGGTACAACTCCGAGTGATCTTCCACCTGTAGATTTTATTGTAGATCCTTT 12592 Query 38271 AGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCA 38330 |||| | |||| || | ||||| || |||||| ||| ||||| | ||| || Sbjct 12591 TGCTCTCACATTATGAATATTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACA 12532 Query 38331 TTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 | ||| | ||||| ||||||||||||||| || || || || | | |||||| Sbjct 12531 GTTTTTCACAGTATCGAATATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACA 12472 Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 | || |||| ||||||| ||||| |||||||| | ||| || || || Sbjct 12471 TGAACTCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAA 12412 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 |||||| |||| ||||||| || | || |||||||||| || | | ||||| Sbjct 12411 ATATTTTTTAGACATTAAATTATACGTCTGTAACGCATCATCTATTTCTTCATCATGAAT 12352 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC-TATTATTTTATTATTCTGTT 38569 ||| | ||| | ||| | | || ||||||||||| || | | ||| || | || Sbjct 12351 TTCTAAGGCTACACGCATAAAAACATCCTGTGGTCTTTCATACCA-TAAATTTTTATTTT 12293 Query 38570 TAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCT 38627 | | | ||||||| ||| || ||||| | ||||||||| | | | | ||||||| Sbjct 12292 TTAACAAATACGATCTTTGCAAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTCT 12235 >seq257 Length=62978 Score = 230 bits (254), Expect = 2e-55 Identities = 407/590 (69%), Gaps = 5/590 (1%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||| ||| ||| | ||||| |||||||| |||| |||||| || || || | Sbjct 56010 ACATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAG 56069 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||| ||||| |||||||| | ||| ||||| | ||||| || ||||| ||||| Sbjct 56070 ACCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAA 56129 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGA 11805 || || || || |||||||| | || |||| || | | || || | Sbjct 56130 AATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGT 56189 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||||||| | | ||| || ||||| ||||| | | ||||| || ||||| Sbjct 56190 TATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTT 56249 Query 11866 AAATAAATGCA-TTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 ||||||| |||||||| | | ||||| | |||||| ||||||| || |||| Sbjct 56250 AAATAAAAAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTACA 56308 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || ||||| |||||||| || |||||| |||||||| | ||||| || |||| Sbjct 56309 TCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTA 56368 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || ||| | ||| |||| | ||| ||||| ||||| ||||| | || Sbjct 56369 TCTGAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTG 56428 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 |||||||||| | | || ||||||| | | |||| || | | | | || ||||| Sbjct 56429 CAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAAT 56488 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164 | |||||||| || |||||||||||||||||| | |||||||| || | || || | Sbjct 56489 CGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCT 56548 Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 |||| | | ||| ||| || || || || || || | ||| || ||| Sbjct 56549 TATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTA 56598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522228970160