Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq257 329 3e-85 >seq257 Length=62978 Score = 329 bits (364), Expect = 3e-85 Identities = 593/848 (70%), Gaps = 34/848 (4%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 |||||||||||||| || || |||||||||| ||| || ||||||||||| ||||| || Sbjct 55735 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 55794 Query 12935 GGATTTTTCGAACAATAGTATTTTTTACAC---CCTAATTCTAGTAACAATCTGTCAGCA 12991 ||||||| | | ||| | |||| | |||| || | ||| | ||||||| Sbjct 55795 GGATTTTCAGTG---TTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCC 55851 Query 12992 ACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATA 13051 ||||| |||||||| | ||| | | |||||||||||| ||||| |||| || | | Sbjct 55852 ACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGA 55911 Query 13052 GCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACG 13111 ||| | | ||| | || ||| || | |||||||| ||||||| || ||| | | Sbjct 55912 CTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTACT--G 55969 Query 13112 TTCTCTAATGGAGGATTTGAT---AGATGCTTAAACATCATACATGCAAAATCACAGTGC 13168 || || |||| | ||| | | || | | | ||||||||| ||| ||| Sbjct 55970 TT-TCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAGAGACATGCAAATTCAACATGC 56028 Query 13169 AATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGT 13228 | ||||||||||||||| |||| || || || || || ||||| ||||| | || ||| Sbjct 56029 ACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCACGT 56088 Query 13229 TTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCA 13288 ||||||| ||| ||||| | ||||| || || || || || || ||||| || ||| Sbjct 56089 TTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTACGCACGCA 56148 Query 13289 AACGCTATCAACCTTTCACCATA-CGTACTATTTTTACTCTCTATCCACTTTCTGGCCCA 13347 || || || | ||| | || | | | | |||||| | |||||| || | | ||| Sbjct 56149 AATGCAATTATTCTTGTAGCAAAACATGAT-TTTTTATCCGTTATCCATTTCATAGTCCA 56207 Query 13348 GTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTA--TTGCGTTAAATAAATAAt-tttt 13404 || |||||| | ||||| ||| |||| | | |||||||||||||| ||| |||| Sbjct 56208 GTCTGCTTTATTTTTAATT--GTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTT 56265 Query 13405 ttC-CTTACTGTCTAAAATATAAGTATCTAT---CAATAAGCTATACATTTCTGAATGAA 13460 ||| ||| | ||| |||||| || ||||| |||| || ||||| || ||||| | Sbjct 56266 TTCTCTTGTTCTCT--AATATATGTTTCTATTAGCAATGAG---TACATCTCAGAATGTA 56320 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT-CG 13519 ||||||| ||| ||||||||| ||||||| ||||||||| |||| || |||||||| || Sbjct 56321 TATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCG 56380 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579 | ||||| ||||| | ||||| ||||| ||||| || || |||||||| || Sbjct 56381 CTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCC 56439 Query 13580 AGTATGTGCTTAATAAAttttttttCGTTTTC--TGACAACTTTAACCAATCTGGAAAAT 13637 | | | | ||||| | | |||| | || | | | | || |||||| |||| Sbjct 56440 AACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATT--CCAATCGTCTAAAT 56497 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCA 13697 | || ||||||||||| || ||| | |||||||| || | || |||| |||||| | Sbjct 56498 CATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATATAAAT 56557 Query 13698 TCCATATA 13705 ||||||| Sbjct 56558 CCCATATA 56565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980094109478