Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq301 158 1e-33 seq235 123 2e-23 >seq301 Length=55955 Score = 158 bits (174), Expect = 1e-33 Identities = 182/243 (75%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 ||| |||||| || ||||| |||| || || || ||||| ||||||||||| || | Sbjct 34929 TAACATTTTAATTACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTA 34988 Query 94827 CGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 ||||||||||| || |||| | |||||| ||||||||||| |||| || ||||| Sbjct 34989 TATTATAATCGCT--TAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCT 35046 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 || ||||||||||| || |||||||| || | || || ||||| || | | ||| Sbjct 35047 CTGTTGATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGT 35106 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 |||| | || || |||| || || |||||||| || |||||||| ||||||||||| Sbjct 35107 ATCAGAATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTG 35166 Query 95005 CAT 95007 ||| Sbjct 35167 CAT 35169 >seq235 Length=65598 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| ||||||| | ||||| || | |||||||| || || | || ||||| || Sbjct 33356 TCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACT 33297 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || | ||| |||| ||||| || |||| || |||||||| ||||||||||| Sbjct 33296 CAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGG 33237 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| ||||| | |||||||| ||||| | | | ||| | | ||||| Sbjct 33236 TATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGAC 33177 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 33176 TTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCAT 33129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288740002040