Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq257 230 6e-55 >seq257 Length=62978 Score = 230 bits (254), Expect = 6e-55 Identities = 505/745 (68%), Gaps = 14/745 (2%) Strand=Plus/Minus Query 22197 ACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAA 22256 ||||||||| | ||| | | ||||| ||||| | |||| || || ||| ||| || Sbjct 56460 ACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGATGGGATTGTTAATGAAAA 56401 Query 22257 TCTAGTGACTAATTTTGCATCTGAAATTCA-ATACCCAGAGGCCAGATGTTTCTATGGTG 22315 ||| | ||||||||| | ||| |||| ||||| ||| || |||||| | ||||| Sbjct 56400 TCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATACC-AGAAGCTAGATGTGTTTATGGAT 56342 Query 22316 TGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACAGTCAC-TC 22374 | ||||| ||||| |||||| | || | || | || || || | || | || | Sbjct 56341 TCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATTGCTAATAGAAACATATA 56282 Query 22375 GTAGAAGATAAAGACGAACAACGAAACTT-ATTCCGCGCGATTCGCACCATTCAATCAAT 22433 |||| || |||| ||| || || || ||| ||| ||| || || | | |||| Sbjct 56281 TTAGA-GAACAAGA-GAAAAAAGATTTTTTATTTAACGCAATTTCTACAATACCAACAAT 56224 Query 22434 TAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCAT---TCGCGGA 22490 ||| ||||| ||||| ||| | |||||||||| | || || |||| | || Sbjct 56223 TAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAAAATCATGTTTTGCTAC 56164 Query 22491 ACGTCTTATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 | | | ||||||||||| ||| || ||||| |||||||| |||||| | ||| | | Sbjct 56163 AAGAATAATTGCATTTGC-GTGCGTAGAAGGTATTTTCTTCTCTGGATCTTTTGCATCCA 56105 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | || ||||| |||||||||| | | ||||| ||||| || || || ||||| ||||| | Sbjct 56104 TATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTACTTTCTCCAATGAATTAATCA 56045 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTC 22669 | ||||||| || | ||| || ||||| ||| | || || ||| | Sbjct 56044 GTAGAGATGAAGGAGTGCATGTTGAATTTGCATGTCTCTTAAAT---GCTCACTTAGAAG 55988 Query 22670 ATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTC 22729 | ||| ||||||||||| ||| | || || ||| | | ||||| | | |||||| Sbjct 55987 AAAAAGCACCATATGAAACAGTAATCGAAATAGTTAAAGAAGCAGTAGCAATTGAACAAG 55928 Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTA 22789 |||| ||| || |||| |||||| | ||||| || || |||| ||| ||| Sbjct 55927 AATTTGTTTCTGAAAGTCTACCCGTAAGTTTAATTGGAATGAACTGTAAATCTATGTGTA 55868 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 || || ||||||| || || ||| ||| || || || | | || ||||| | Sbjct 55867 ATTACATAGAATTTGTGGCTGACAATCTCTTAGTTGATCTAGGATTCTCTAAACATTACA 55808 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 || | ||||||||||| | |||||| ||| || | ||||||| |||||||||| Sbjct 55807 ACACTGAAAATCCATTTGATTTCATGGAAAATATATCTTTACAAGGAAAAACCAATTTCT 55748 Query 22910 TCGAAAAAAGAGTTGGTGAATACCA 22934 | ||||||||||| | |||||||| Sbjct 55747 TTGAAAAAAGAGTCGCAGAATACCA 55723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303346269043298