Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq58 96.9 3e-15 >seq58 Length=2400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 20202 CATCTCCCAACGTGTGAATAAACTCCCCGGGT-CTAAGACCAGTAACATGAGCAAGCATA 20260 |||| || || | || ||||| || || ||| |||| |||||||| | || | ||| Sbjct 505 CATCACCTAAAGAATGGATAAATTCACCTGGTTCTAAT-CCAGTAACTTTTGCCACCATT 563 Query 20261 TAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGAC 20320 ||| | || ||||| || ||||| |||||||| |||||||| ||||| || || || Sbjct 564 AAAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCGGAT 623 Query 20321 CTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGA 20380 || ||||| | |||| | | | ||||| |||||||||||| |||| | ||| Sbjct 624 CTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAAATAAACAATGA 683 Query 20381 CAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC-ACACATAATGATTCT 20439 || || ||||| ||||| | || | | || ||||| || ||| |||| ||||| Sbjct 684 CATGGTGGAAGAGCCATTTCCCGTAATTGTTCGGGATTCCATGCGACA-ATAACCATTCT 742 Query 20440 TCTA 20443 |||| Sbjct 743 TCTA 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441370377966760