Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq235 136 9e-27 seq301 109 1e-18 >seq235 Length=65598 Score = 136 bits (150), Expect = 9e-27 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 |||||| || | ||||| || |||||| |||||||| || || | || | || Sbjct 33344 TCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACC 33285 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTC 288374 ||||| |||||||| ||||| || |||| | |||||| ||||| |||||||| Sbjct 33284 ATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGA---TCTGGAGGTATTCCTTC 33228 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 || || || ||||| ||||| || |||||||| || ||| | ||||| ||||| || || Sbjct 33227 CTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGT 33168 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| ||||| || || || || ||||| |||||||||||| Sbjct 33167 GATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 33128 >seq301 Length=55955 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| | ||| | ||| | ||| ||| || || |||||||| ||| Sbjct 34943 CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTT 35002 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | || | || || || | ||||||||||| || |||| | |||||| |||| Sbjct 35003 AATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTG---ATCTGGA 35059 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||||||||| || || || || || |||||||||| ||| |||| Sbjct 35060 GGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCT 35119 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || || || ||||| || || || |||||||| Sbjct 35120 ACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 35169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647764812642