Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001888035.1_202016-12-01] 439 sequences; 5,850,007 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq301 147 2e-30 seq235 127 1e-24 >seq301 Length=55955 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||| |||||||| | ||||| || || ||||| || |||||||| Sbjct 34943 CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTT 35002 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | || || | ||||| || || ||||||| | |||||| || || Sbjct 35003 AATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGT 35062 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || || || |||||| ||||||||||||| ||||||||| Sbjct 35063 ATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACT 35122 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15178 || | ||||| ||||| ||||| |||||||| ||||| || ||||||| Sbjct 35123 TCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCATAT 35171 >seq235 Length=65598 Score = 127 bits (140), Expect = 1e-24 Identities = 177/247 (72%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | |||||| | ||| |||||||| ||||| ||||| || || |||||||| || Sbjct 33355 CCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTC 33296 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | ||||| |||||||| || || ||||||| | ||||| || || Sbjct 33295 AATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGT 33236 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||| ||| ||| ||||||| | ||| | ||| || Sbjct 33235 ATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACT 33176 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 |||| || || || || || || || ||||| ||||| || ||||| | | | |||| Sbjct 33175 TCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCAT-TGGGGTAAAAAT 33117 Query 15190 TTTTTAA 15196 ||| ||| Sbjct 33116 TTTGTAA 33110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390087841115